LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90990g00005	ATGGCTGCAAAACTTTATGGTGGAGCTTACCTCTCTTCCTTTGTTGATGCTGTTTTGGACAACCTGTCTAAAATACTTGAAGATGATGACTCTGTCCTGAAAGGAAACTACACTGCTTTGGAGTTGCTTGAAAGGTTGGAGAAATGTCTGTTTGAGGTTGGACCTTTTCTTGATGATGCTGAGCTGAAGCAGTTCACTAACAAGAGAGTCAAGGTGTGGCTTGCTGATCTCCAAGATGCTCTCTATTTGGCTGATGACTTGCTCGATGAACTCTCCACAAAATCTGCCACTGCTACTGCCTCTCAAAGGGATCCAGCAGGTATCTCTTCTTACTGTATTTCTGTTGTTGATTCAATCTTGGAAGATAGTCGTGAAATGGAGGACATAGCTCGAAAACTAGAGAATATCGTAGCACGCAAAGGTTATCTTCCTCTGGAGAAGACTGCCATGGTGGACATCTCATCATGGAGAACTCCATCCACATCTCTCGTTGTAAGTTCTGACATATTTGGTCGGGACAAAGACAAGGAGGAGATAATCAAATTGCTGTTAGCTGATACTTGTCATGCTCAATCACCTTTTACTGTTATCCCAATTTGGGGTATGGGTGGCATAGGAAAAACTACCTTGGCTCAACTGGTTTACAGTGATGACAAAGTGGTGGAATATTTTGACACTAGAGTATGGGTTTGTGTAGCTGAAAATTCAGACCCTATTCATGTTACAAGGACAATAATAGGGGCAATAGATCCTAGTCCCTGCAGCATGGACAGTTTTGATGTTCTTCAGACAAAGTTGAAGGGCAAGTTGATAGAAAAGACATTCTTAGTTGTTTTAGATGATGTCTGGCATAGTGGACGAGTCACATGGGAGAAATTTCTAGAACCTTTTCAACATGGGAATAATGGAAGTAGAATTCTGTTAACAACCCGTATTGAAAAGGTTGCTTCTACGTTCGCTGCTACCAGTCAACATTATCAACTAGATTTATTGTCCGATGAAGATTGTTGGTCGGTGTTTTTGAAGCATTCATCTATTTCTACTAATTTAGAACAATATGCAACTCTAGAACCAATTGGTAGAAATATTCTTGAAAAGTGTAAGGGATTACCTTTGGCTGTGAAGACACTTGGAAGTTTATTGCGCAACAAGTATGATGCAGGGCATTGGAAGAAAATACTTGAAAGTGAAATTTGGGAGCTCCCGGAAGATGAAAGTGAGATTGTTCCCGCACTAAGAGTAAGTTATCACTACCTCCCTTCATATTTAAAACGATGCTTTATTTATTGCTCATTATACCCCGAAGATTATCAATTTGATAAAGACGAATTAATCTTGCAATGGATGGCTGAAGATCTCTTACCACCAATGGAAAACGACACATTAGAGAATATTGGTTCCGAATGTTTTGATGAATTAGTTGCAAGGTCTTTTTTTCAATCTTCCAGTGCTTCCACTGGATTATTTGTAATGCATGATCTCATGCATGATCTTGCAACGTTTTTTGCTGGAAGATTCTTTTTCAGAGAATTTGGCAACCAACGCATGGTTGACAGCAAAACTCGTCATTTGTCATGTGATCGGGATCCAATTTCAAGATTTCCAGAGGGCTATGATGGAGTAATACACATGAGAACATTTCTATGTTTTGATGTTAAATCAACTGAAATCGAGGTGAAATCAAGGTGTTTAAGACTTTTGGCATTTCAAAAGTGTGAAATCCTGTCATTGCCTGATTCAATAGGTGAATTGATCCATTTGCGTTATTTGAATCTCTCTTCCACACCTATTGTCACATTGCCTGAATCATTGTGTAAATTATACAATCTCCAAACGTTGAAGTTGAGAGATTGTGATAAGCTTGAAATGCTTCCTCGTGTGCAAGATCTTGTAAACCTGCGCCACCTTGATATCAGAGGAACATCTTGTTTGAAAGAGATGCCGAAGGGAATGAGCAAGTTAAAACATTTGAATTTGTTAGGATTCTATGTTGTGGGAGAGCATGAAGAGAATGGGATAGGAGAATTGGGTCCAATTGATGTTCATGGCTCATTTCGCATTTCCAAATTAGAGAATGTGAACAACAGCAGCCAAGCTTCGAAGGCAAATATGGGTAGCAAGAAGCACATCAACGTTTTAGAGTTGAAATGGCGTTATTACGCTGATACTATGAGTGTTGAAACTGAAAGGGATATACTTAAAGAGTTACAACCTCATTCAAACTTGAAGGAGCTAACAATTGATGGTTATAGGGGTGAAATATTCCCCGATTGGTTAGGCCTTTCTTCCTACTCCAATATAACCAAGTTGAAAATTTGTTTTTGTAAGAATTGTCGTGAGCTTCCTTCGCTTGGACAGTTACCCTCTCTACAGCATCTGCAGATTTATAAACTGTTTGGGTTGGAGAGAATTGGTGAAGAGTTTTACAAGAGCGGTGAATCATGCCATGAGGTGACACCCTTCAGATCTCTTGAATACCTGGAATTTGATGGAATGAAATGTTTACAAGAGTGGCATATTCCTGATGAGTTTGATGGATTTCCTAAGCTTACAACCCTTGTAATAAGAAGTTGTCCGGTGTTAAAGGGAGATCTGCCAGCTCACCTTCCGGCTCTGGAGCAACTTGCCATTTGGGATTGCGAAGAGCTTACGTGTTCATTCCCGAGATCTCCCAAGCTTCACCAATTAGAGGTAACGACTTCTGTTCATGGGCTTAATCAGAGTTCGCCGCACGAGGTAGTGATTTCTTATACCCAGCTGGCGAAGTCCGTATTGGAGTGCCTGCCCCACATCCAATCGCCTTATCTCCAAGATTTGAAAATCAATAATTGTCGATCAGCAATATCAATTTCAAATGATCATTTGCCTGACTCATTACAATATCTGCAAATCTCCCGTTGTTCAAAATTAACAATCTCAGAGCCACTGCAACACGAGTCCCTAGCGGAGATACATCTGGACTTCTGTCGTTCACTGAGGCTGTTGCCATTGGAAGCTCTCTCAAATCTCAAGACACTCTCAATCGAACGCTGCTACGATTTAGTATCCTTGCCGCCACTACGCTTTGCTGCTCCCAACCTAAAGAAACTGACAATAGCGGTTTGCCCAGAAATTGATTGTTTTGGAGAGGAGTGCCTCCCGCCGAGCTTGACAACTCTTGAGATCCGTAAATGCCAGAAAGTAGAGAGGTGGATAACATCCAATGGTTTGCACACTGAAGGCCTTACCCATCTTATCCTTAAAGAATGGAATGAAGTTAAGTCGTTCCCAACAGAGGACGTTAGACTGCAAGGGCCTTCACCATCTCACCTCCCTCCAAGAATTAACAATTCGAGACTGTCCCGAGCTAAAGCATATGAAAACAGAAGAGCTGCCCGCCTCTCTATCAATAATCCTCATCGACCCATTACGTTCTTTGAGGCTTGA	3426	0.411	MAAKLYGGAYLSSFVDAVLDNLSKILEDDDSVLKGNYTALELLERLEKCLFEVGPFLDDAELKQFTNKRVKVWLADLQDALYLADDLLDELSTKSATATASQRDPAGISSYCISVVDSILEDSREMEDIARKLENIVARKGYLPLEKTAMVDISSWRTPSTSLVVSSDIFGRDKDKEEIIKLLLADTCHAQSPFTVIPIWGMGGIGKTTLAQLVYSDDKVVEYFDTRVWVCVAENSDPIHVTRTIIGAIDPSPCSMDSFDVLQTKLKGKLIEKTFLVVLDDVWHSGRVTWEKFLEPFQHGNNGSRILLTTRIEKVASTFAATSQHYQLDLLSDEDCWSVFLKHSSISTNLEQYATLEPIGRNILEKCKGLPLAVKTLGSLLRNKYDAGHWKKILESEIWELPEDESEIVPALRVSYHYLPSYLKRCFIYCSLYPEDYQFDKDELILQWMAEDLLPPMENDTLENIGSECFDELVARSFFQSSSASTGLFVMHDLMHDLATFFAGRFFFREFGNQRMVDSKTRHLSCDRDPISRFPEGYDGVIHMRTFLCFDVKSTEIEVKSRCLRLLAFQKCEILSLPDSIGELIHLRYLNLSSTPIVTLPESLCKLYNLQTLKLRDCDKLEMLPRVQDLVNLRHLDIRGTSCLKEMPKGMSKLKHLNLLGFYVVGEHEENGIGELGPIDVHGSFRISKLENVNNSSQASKANMGSKKHINVLELKWRYYADTMSVETERDILKELQPHSNLKELTIDGYRGEIFPDWLGLSSYSNITKLKICFCKNCRELPSLGQLPSLQHLQIYKLFGLERIGEEFYKSGESCHEVTPFRSLEYLEFDGMKCLQEWHIPDEFDGFPKLTTLVIRSCPVLKGDLPAHLPALEQLAIWDCEELTCSFPRSPKLHQLEVTTSVHGLNQSSPHEVVISYTQLAKSVLECLPHIQSPYLQDLKINNCRSAISISNDHLPDSLQYLQISRCSKLTISEPLQHESLAEIHLDFCRSLRLLPLEALSNLKTLSIERCYDLVSLPPLRFAAPNLKKLTIAVCPEIDCFGEECLPPSLTTLEIRKCQKVERWITSNGLHTEGLTHLILKEWNEVKSFPTEDVRLQGPSPSHLPPRINNSRLSRAKAYENRRAARLSINNPHRPITFFEA	1141

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90990g00005	1141	Gene3D	Ribonuclease Inhibitor	549	909	IPR032675	-
	Stsc90990g00005	1141	Pfam	Rx N-terminal domain	14	99	IPR041118	-
	Stsc90990g00005	1141	PRINTS	Disease resistance protein signature	998	1014	-	-
	Stsc90990g00005	1141	PRINTS	Disease resistance protein signature	269	283	-	-
	Stsc90990g00005	1141	PRINTS	Disease resistance protein signature	367	381	-	-
	Stsc90990g00005	1141	PRINTS	Disease resistance protein signature	196	211	-	-
	Stsc90990g00005	1141	Pfam	NB-ARC domain	173	396	IPR002182	GO:0043531
	Stsc90990g00005	1141	FunFam	Probable disease resistance protein At1g63360	416	501	-	-
	Stsc90990g00005	1141	Gene3D	-	15	130	-	-
	Stsc90990g00005	1141	PANTHER	DISEASE RESISTANCE PROTEIN RP	59	882	IPR044974	GO:0006952
	Stsc90990g00005	1141	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	156	430	IPR027417	-
	Stsc90990g00005	1141	Gene3D	-	330	414	IPR042197	-
	Stsc90990g00005	1141	SUPERFAMILY	RNI-like	821	1062	-	-
	Stsc90990g00005	1141	Gene3D	-	415	500	IPR036388	-
	Stsc90990g00005	1141	SUPERFAMILY	L domain-like	490	897	-	-
	Stsc90990g00005	1141	Gene3D	-	156	325	IPR027417	-
	Stsc90990g00005	1141	Gene3D	Ribonuclease Inhibitor	911	1098	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90990g00005	Stsc-Chr90990	28406	31885	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90990g00005	181	665	WRKY Transcription Factor Family	AT5G45050	22.182	2.17e-12	69.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90990g00005	-		-	ahf:112709990	1295.8