Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90989g00001 AGACAGTGCTTCGACCTCAGCCGTAGGATTAGGTTCCTCGCGCCTCTCTTCTATGAGCTTCTCGACGTTACAGACGCCCTCCCAAACGACGCCGTTTCCGCGCTCATCTCTCTTAACGAAGCTCTTGCCTCAGCCAAGGAACTCCTCAAATTTTGTTGCCGAGCAAGCCAGATATTGGAGAGAGAGCAAATTAAGTGCAAATTTAATGATGTCGCCGTTCATTTTGAAGAAGCTATAGGCAAGATATCCTGTGACAAACTTGATATATCTGAAGAAGTCAAGGAGCAGGTTGCACTTGTGACTGCACAATTTGGAAGAGGCAGGGAGGTTTTTGATCCACCTGGTCTTCAGCTTTATGATGATCTGTTGTCCATTTGCAACCAGAGCTACGATGTGATTCCTGAACAAGATAAACTGCATATAATCTGCAAAAAGCTGCACTTTACGAGTGTGGGTGACATCAAACAAGAGTTCATTGCACTTGATAAGATGTTTGTAGACATGGGTGATAAGTTTGAGAAAAGCACACAGGATATATCTACAGTTTTGAAAAAAATTGAAGATTTCATACTGACAGAATCTGCAAATGTTAATATGCTATCAAGTGATGATTCCTCTACTCAAGCCGATGAGTCATACACAAAACTATGTTCTCAATCACTGGTTATACCAGATGAGTTTCGCTGCCCAATATCTCTGGAGATAATGAAAGATCCTGTAATCATTTCTACAGGACAGACATATGAGCGAGCGTGCATAAAGAAATGGCTTGAAGCTGGCCATGGAACATGTCCTAAGACTCAGCAGATTCTTTCGAGCTCTGTCCTTATACCCAACCATGTTCTATATATCCTGATATCAAATTGGTGTGAAGCAAATGGAGTGGAGCCACCTAAAAGAACAGGGAAGTTACGACTCTGCAAGGAATCATCAGATGGCTCTCCTGAATTTATAGACATTGATACTCTATTGAGCAGACTTACTTCCAGTGACATTGAGGATCAGCGACGCACAGCAGAGGAGCTCCGTCTTCTAGCCAAGCGAAGCAGTCAAAATCGAATATTGATTGCTGAGGCTGGTGCTATACCCCTTCTTGTTGATCTCCTCTATGCACCTGACAAGGGCACTCAAGAGCATGCAGTTACTGCTCTTCTGAACCTTTCTATTTGTGGGGATAATAAAGAGCGCATCATGGCTTCTGAAGCTGTTTCAGGTATCGTTCATGTGCTGAAAAATGGCATTATGGAAGCGCGGGAAAATGCTGCAGCCACCCTTTTCAGCCTCTCTGTAATGAATGAGAACAAAGTGTTAATTGGTGCATCTGGAGCAATTCAAGCACTAGTCACTCTTTTCTGTGAGGGAAGTCAAAGAGGGAAGATGGATGCTGCAACAGCCTTATTCAATCTGTGCTTATATCAAGGGAACAAAGGGCGTGCAATTAGGGCCGGTATCATGCCTAAGTTGACAGAAATGGTAACTGAACGTGGCGAGGAGATGAGGGATGTGGCATTGGCACTAATGGCCTTACTAGTTAGCCACCCGGAGGGAAAAGCGGTAGTTGGATCCATGAATGCTGTGCCAACTTTAGTGGATATAGTCACTAATGGATCTCCTAAGAACAAGGAGAATGCAACTTCCGTGCTAGTTCACCTCTGCGTTGGAGATCCGATGAACGTATCAAGTGCCTGTTCACTTCGGGTGGTCACTCCTCTCTTGGACCTTACACAAAATGGTTCGGACAGGGGCAAGCGTAAAGCCGCGCAGCTTCTCGAGCTGATCGGCACTCTGAGATCATTGTAG 1800 0.4472 RQCFDLSRRIRFLAPLFYELLDVTDALPNDAVSALISLNEALASAKELLKFCCRASQILEREQIKCKFNDVAVHFEEAIGKISCDKLDISEEVKEQVALVTAQFGRGREVFDPPGLQLYDDLLSICNQSYDVIPEQDKLHIICKKLHFTSVGDIKQEFIALDKMFVDMGDKFEKSTQDISTVLKKIEDFILTESANVNMLSSDDSSTQADESYTKLCSQSLVIPDEFRCPISLEIMKDPVIISTGQTYERACIKKWLEAGHGTCPKTQQILSSSVLIPNHVLYILISNWCEANGVEPPKRTGKLRLCKESSDGSPEFIDIDTLLSRLTSSDIEDQRRTAEELRLLAKRSSQNRILIAEAGAIPLLVDLLYAPDKGTQEHAVTALLNLSICGDNKERIMASEAVSGIVHVLKNGIMEARENAAATLFSLSVMNENKVLIGASGAIQALVTLFCEGSQRGKMDAATALFNLCLYQGNKGRAIRAGIMPKLTEMVTERGEEMRDVALALMALLVSHPEGKAVVGSMNAVPTLVDIVTNGSPKNKENATSVLVHLCVGDPMNVSSACSLRVVTPLLDLTQNGSDRGKRKAAQLLELIGTLRSL 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90989g00001 599 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 296 IPR013083 -
Stsc90989g00001 599 SUPERFAMILY RING/U-box 222 298 - -
Stsc90989g00001 599 CDD RING-Ubox_PUB 224 276 IPR045210 -
Stsc90989g00001 599 SMART Ubox_2 226 289 IPR003613 GO:0004842|GO:0016567
Stsc90989g00001 599 FunFam RING-type E3 ubiquitin transferase 306 598 - -
Stsc90989g00001 599 SMART arm_5 431 471 IPR000225 GO:0005515
Stsc90989g00001 599 SMART arm_5 513 553 IPR000225 GO:0005515
Stsc90989g00001 599 SMART arm_5 349 389 IPR000225 GO:0005515
Stsc90989g00001 599 SMART arm_5 472 512 IPR000225 GO:0005515
Stsc90989g00001 599 SMART arm_5 555 595 IPR000225 GO:0005515
Stsc90989g00001 599 FunFam RING-type E3 ubiquitin transferase 222 296 - -
Stsc90989g00001 599 Pfam Armadillo/beta-catenin-like repeat 514 552 IPR000225 GO:0005515
Stsc90989g00001 599 Pfam Armadillo/beta-catenin-like repeat 349 388 IPR000225 GO:0005515
Stsc90989g00001 599 Pfam Armadillo/beta-catenin-like repeat 432 470 IPR000225 GO:0005515
Stsc90989g00001 599 Coils Coil 332 352 - -
Stsc90989g00001 599 Pfam U-box domain 223 293 IPR003613 GO:0004842|GO:0016567
Stsc90989g00001 599 PANTHER U BOX DOMAIN-CONTAINING 2 592 - -
Stsc90989g00001 599 Gene3D - 305 599 IPR011989 -
Stsc90989g00001 599 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 360 402 IPR000225 GO:0005515
Stsc90989g00001 599 ProSiteProfiles U-box domain profile. 222 296 IPR003613 GO:0004842|GO:0016567
Stsc90989g00001 599 SUPERFAMILY ARM repeat 319 593 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90989g00001 Stsc-Chr90989 9 4866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90989g00001 3 596 U-box Gene Family AT3G46510 53.884 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90989g00001 - - tpra:123888033 733.791