Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90986g00005 ATGGAGTGGTTTAGAGGCCAAATCATAGGCCAAGGCTCCTCAGCCACCGTATGCCTAGCCTCCTCCACCACCTCCGCCGCCGTCTTTGCCGTCAAGTCAGCAGAATTCTCACAATCACAACACCTCCAAACAGAGCAAAAAATCTTGTCCACGCTCTCTTCACCGTACATAGTAACTTACAAAGGCTTTGATATCACAAAAGAGAAAAACAAGCTCATGTTCAACCTCTTCATGGAGTATATGCCCCATGGAACACTCTCCAACCACGGTGGCCGCCTCCGGGAGCCGGTGATCGCGCGCTACACGGAGCAAGTTTTAAAGGGGCTAGAATACTTGCATTCAAGAGGGTTGGTGCATTGTGACATAAAGGGTAGTAACATCCTTGTTGGTGAAGGTAATTGTGTCAAAATTGCTGACTTTGGATTAACAAAGAGGCTAAATGAGTCGGCCGGGGTGCCACTGGCTGGCACCCCGGCTTTCATGTCGCCGGAGGCGGTGAGGGGGGAGGAGCAGGGGTACCCTTGTGATGTGTGGGGAATTGGGTGCACTGTGATTGAGATGGCCACTGGTTGTTCACCTTGGCCTAAAGTTAAGGACCCTGTTTCAATGCTGTATCATGTTGGATATTCCGGTGAGGTTCCTGAGATTCCAAGGTTTCTGTCTGAAGAAGCAAAGGATTTCTTGGAGAAGTGTCTTAGGAGGAATCCAAGGGAGAGATGGAGTGCTAGCCAATTGCTGAATCATCCATTTCTTGGGGAATTCAGTTCCAAAGATGGTGATTGTGTTGTTGGGGAATCCAATAATAATTCATCATCATCGTGGTCTCCAACTAGTATTCTTGATCAAGGATTTTGGAATTCTGTGGAGGAATCAGAATTGCCGATCGCTGCTGAAGGGGAATTTGTTCAAACATGTTGTGTGCATTCTGCTTCTGATAGGATCAAGAAGCTGGCTTTGTGTTCTGGTGGGCCCAATTGGAATTGGGAAAGTGAGAATTGGATCACAACTAGAGGGAATAACAATGGTAAGGGTGAGGGTTCTTGTTCTTGTTGTTGCATTGGTGGATCAATTATAGCTTCAAATTCAGCTAGTGATTCTTGGTGTGAGGTGGAGGAAAGTAATAATAGTAATAACAATAATAATGTTATTATTATTAATAGTAATTGTAGAATTAGTAGGTGTTGTTATGAAGAATTTAAATGTAGGGAGGTTAGGGTTGAAGTAGATAGTGTCAATTTTGATATAATGCAACCATTGACATTAGATATTTTATAA 1275 0.4424 MEWFRGQIIGQGSSATVCLASSTTSAAVFAVKSAEFSQSQHLQTEQKILSTLSSPYIVTYKGFDITKEKNKLMFNLFMEYMPHGTLSNHGGRLREPVIARYTEQVLKGLEYLHSRGLVHCDIKGSNILVGEGNCVKIADFGLTKRLNESAGVPLAGTPAFMSPEAVRGEEQGYPCDVWGIGCTVIEMATGCSPWPKVKDPVSMLYHVGYSGEVPEIPRFLSEEAKDFLEKCLRRNPRERWSASQLLNHPFLGEFSSKDGDCVVGESNNNSSSSWSPTSILDQGFWNSVEESELPIAAEGEFVQTCCVHSASDRIKKLALCSGGPNWNWESENWITTRGNNNGKGEGSCSCCCIGGSIIASNSASDSWCEVEESNNSNNNNNVIIINSNCRISRCCYEEFKCREVRVEVDSVNFDIMQPLTLDIL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90986g00005 424 ProSiteProfiles Protein kinase domain profile. 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90986g00005 424 Pfam Protein kinase domain 6 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90986g00005 424 SUPERFAMILY Protein kinase-like (PK-like) 3 254 IPR011009 -
Stsc90986g00005 424 Gene3D Transferase(Phosphotransferase) domain 1 3 292 - -
Stsc90986g00005 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Stsc90986g00005 424 SMART serkin_6 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90986g00005 424 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 341 - -
Stsc90986g00005 424 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Stsc90986g00005 424 Coils Coil 424 424 - -
Stsc90986g00005 424 CDD STKc_MAPKKK 2 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90986g00005 Stsc-Chr90986 32713 34088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90986g00005 3 357 MAP Kinase Kinase Kinase AT5G55090 49.189 3.75e-112 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc90986g00005 Pkinase 4.8e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90986g00005 K20716 - gmx:100797801 406.757