Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90986g00003 ATGAATCCTGATATCTCCGATTTCGAAGTAAACACTGGTCTGAATCTTCTTACTACCAACACAAGCAGTGATCAATCCATTGTTGAAGACGACATCTCACCTAATTCACAACACAAAAGATCCCTCCCTGAGCACACGGTTGCTATTCTCGCCGACCTGGATCGAATGAAGGCGGAGAACCAACGCTTGAAGGAAAGCCTTGATCATGTAACTGCCGAATACAACGCCCTCCAGATGCAAGTGGCCACCTTGATGCAACAACAACAAAAGTCAGAGGAAGAGAAGAAGCAAGAGACGGTGCCAAGACAGTTCATGGATCTTGGATTGGCCACTAATAATGGTGCTGAGATTGGGGAGGAGGCTTCGCTTTCTTCGTCGGAGCGGTCCAAGTCTCCAGAGAGGAAAAATAGAAGCAGTGAAGATCAAGAAAAGAATAGCAGAGAAGATAGCCCCTCAGGCAATAAGGTTCCAAGGTTGAGCCCTCCAAGTACTAGAAATAATCTTGATCAAGCAGAAGCCACCATGAGAAAAGCTAGAGTCTCAGTTAGAGCTAGATCAGAGGCTCCAATGATGACAGATGGATGTCAATGGAGAAAATATGGGCAGAAGATGGCAAAAGGAAACCCATGTCCAAGAGCATATTACAGATGCACCATGGCAGCAGGTTGCCCTGTTAGAAAACAGGTACAAAGGTGTGCTGAGGACACAACAATACTAGTAACAACATATGAAGGGAATCACAACCACCCTCTTCCACCAGCAGCTATGGCAATGGCACAAACAACATCTTCAGCAGCAAGAATGCTTCTCTCAGGATCAATGTCAAGCACTGATGGCCTTATGAATGCTAACTTCCTAACAAGGACTCTCCTTCCTTGCTCCTCAAGCATGGCTACTATCTCAGCCTCAGCACCATTCCCAACTGTCACTTTGGACCTAACTCATTCCCCTAACCCATTGCAATTCCCAAAGCACCAAAACCACTTCCAGTTACCATTCCCTCCTGCTTTGCACCCTCCTTCTTCATTGCTGCCTCAAATCTTTGGTCAGGCACTTTGTAATCACTCTAAGTTCTCAGGCCTTCAACTTTCTCAGGATGCTGATCCTTCTTCCTCGGTTAGTGCTGCCACTGCTGCCATTGCAGCTGATCCTAGCTTCACTGCTGCTTTGGCTGCTGCCATTACTTCCATTATTGGAGGTGCACAACAGCAGAACAACAATGGCAACACCAGCAATAGTGTTGCTAATAATGGCAGCAACACTAATACTCCCAACAACAATACTAATGGAAGCAATAATAATATCAACACCTCCAATTTCTCAGAGAACTAG 1332 0.458 MNPDISDFEVNTGLNLLTTNTSSDQSIVEDDISPNSQHKRSLPEHTVAILADLDRMKAENQRLKESLDHVTAEYNALQMQVATLMQQQQKSEEEKKQETVPRQFMDLGLATNNGAEIGEEASLSSSERSKSPERKNRSSEDQEKNSREDSPSGNKVPRLSPPSTRNNLDQAEATMRKARVSVRARSEAPMMTDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDTTILVTTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSTDGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTHSPNPLQFPKHQNHFQLPFPPALHPPSSLLPQIFGQALCNHSKFSGLQLSQDADPSSSVSAATAAIAADPSFTAALAAAITSIIGGAQQQNNNGNTSNSVANNGSNTNTPNNNTNGSNNNINTSNFSEN 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90986g00003 443 Coils Coil 53 94 - -
Stsc90986g00003 443 MobiDBLite consensus disorder prediction 118 185 - -
Stsc90986g00003 443 MobiDBLite consensus disorder prediction 152 171 - -
Stsc90986g00003 443 ProSiteProfiles WRKY domain profile. 186 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90986g00003 443 MobiDBLite consensus disorder prediction 126 151 - -
Stsc90986g00003 443 SMART WRKY_cls 191 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90986g00003 443 Pfam WRKY DNA -binding domain 193 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90986g00003 443 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 25 415 IPR044810 GO:0003700
Stsc90986g00003 443 SUPERFAMILY WRKY DNA-binding domain 184 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc90986g00003 443 MobiDBLite consensus disorder prediction 403 443 - -
Stsc90986g00003 443 FunFam probable WRKY transcription factor 31 176 253 - -
Stsc90986g00003 443 Gene3D WRKY domain 176 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90986g00003 Stsc-Chr90986 19721 21521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90986g00003 9 412 WRKY Transcription Factor Family AT1G62300 54.566 2.83e-126 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc90986g00003 WRKY 2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90986g00003 - - aip:107613963 528.48