Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90977g00010 ATGGAAGGTCCTCTCATCAACGACTCCACATTTTCCTCCGCCAACCCTTCCTCTTACTCCCTCTCCGAGATTTGGCCTCCCGCCACCGCTACCGCCACCTTCACTCCCATCCACAACCATAAGAGGAAGGAATCATCCCCCTCCTCCTCCACCACCACCACCACCACCGCCACCGCCAATCACTTGGATGATTCCTATGGCAATAAGCATAGGAAACTGCGAGTATCCTTCCAGGAGGGGAACCGTGTCGGAGATTCGAAAGCCGAGGTAGTTGGCGGTAACAAGTTAGCTCGGCAAGGCAGCGACAGCGGCGGCGCTAAGGCTTCTTCTCAGCAACCGCCTAAACAAGACTTCATCCATGTGAGAGCCAGGAGAGGCCAGGCTACCGATAGCCACAGTCTCGCTGAGAGAGCGAGGAGAGAAAAGATTAGTGAGAGGATGAAAATTCTTCAAGATTTAGTCCCTGGATGTAACAAGGTAATTGGAAAAGCACTTGTGCTAGATGAGATAATCAATTACATACAGTCGCTGCAGCGTCAGGTTGAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGATTGAACCTGAGTTCTGTTGTTGAATATTTTCCTTCTAAAGACGTTCAGGTTGGTGACCAGCCATTTGATCTTGCCGGAATGATATTCGGATCACAAGCAACCAGGGGGTATGCTCAGGGATCACAAGCTGGATGGCTGCATATGCAATTAGGCGGCGATTTCGATAGAGCGGCATAA 759 0.5007 MEGPLINDSTFSSANPSSYSLSEIWPPATATATFTPIHNHKRKESSPSSSTTTTTTATANHLDDSYGNKHRKLRVSFQEGNRVGDSKAEVVGGNKLARQGSDSGGAKASSQQPPKQDFIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNLSSVVEYFPSKDVQVGDQPFDLAGMIFGSQATRGYAQGSQAGWLHMQLGGDFDRAA 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90977g00010 252 Coils Coil 174 194 - -
Stsc90977g00010 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 177 IPR011598 GO:0046983
Stsc90977g00010 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 195 IPR036638 GO:0046983
Stsc90977g00010 252 MobiDBLite consensus disorder prediction 46 63 - -
Stsc90977g00010 252 FunFam Basic helix-loop-helix transcription factor 124 196 - -
Stsc90977g00010 252 CDD bHLH_AtBPE_like 117 199 - -
Stsc90977g00010 252 MobiDBLite consensus disorder prediction 1 115 - -
Stsc90977g00010 252 MobiDBLite consensus disorder prediction 1 36 - -
Stsc90977g00010 252 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 40 222 IPR024097 GO:0006355
Stsc90977g00010 252 Pfam Helix-loop-helix DNA-binding domain 131 178 IPR011598 GO:0046983
Stsc90977g00010 252 Gene3D - 124 202 IPR036638 GO:0046983
Stsc90977g00010 252 SMART finulus 133 183 IPR011598 GO:0046983
Stsc90977g00010 252 MobiDBLite consensus disorder prediction 64 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90977g00010 Stsc-Chr90977 45613 49411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90977g00010 1 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 45.833 2.76e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc90977g00010 HLH 1.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90977g00010 - - gmx:100799646 272.322