Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90971g00003 ATGGAGACTGTTATTTCCAATCAATCCCCACCAACTATCCTCAAGAGTGTGAAGGACAAAGAGGAGGAGGAATCATTGCTTGGACAAGCGGAGATCTGGAAGTACATGACATGCTTCACCGATTCCGTTGCCCTTAAATGCGCCGTTCAACTCCGCATCGCCGACATCATAGACCGTTACGGCCAACCCATCTCCCTCTCCAAGATCATCGACAACATCGAGGACGCCCCCTCACCGGACGCCTCCCTTCTCCTCCGCATCATGAGAGTCCTCGTCCGCAAGAACATCTTCTCCGCCGTCAAGTCCGACAACGGTGAGATCCTCTACGGCAACACACGCGCCTCCAAGTGGATCCTCCAAGACACTAAGATGACCCTCGCACCAATGCTGCTCTTAGAGAACCATCCTCTTCACTTGAACCCTGCTCACTTCATCAGTGACATCATCAGGGAAGGAACTGATAAGGGAACCGCCTTCTTCAGGTGCCATGGACACGAGCAATTTGACCTGACCGGATTGGACCCGGAGTACAACAAGTTGTTCAACGAAGGCATGGTGTGCACGGCGAGGACGGTGATAAAGGCTGTGATCGACNNNNNNNNNNTCAACAAGATTGAGTCACTAGTTGATGTAGGTGGTGGACTTGGTGGTTCACTCTCTGAAATTGTGAGGGCTTACCCTCACATCAAGGGTATCAACTTCGACTTGCCGCATGTTGTTGCCACCGCCCCTCAGTACGACGGAATCATTCACGTTGGTGGTGACATGTTTGTCTCTGTTCCCAAAGCCGATGCCATTTACATGAAGTGGATTCTGCATGATTGGAGTGACCAACACTGCATAAAGATATTGAAGAACTGTAGGAAGGCAATACCAGAGAATGGGAAGGTGATAATTGTGGACCATGTTCTGCAGCCAGAAGGAAATGATCTGTTTGATGACACTGGGTTTGCTTTTGATATGATGCTTCTTGCACACAATGCTGGAGGAAAGGAAAGGACTGAGGAGAATTGGAAATGGCTATTTGCTGAAACTGGATTCCCTCGTTACAACATCATCAAGATCAAGGCCCTTCCATCCATCATTGAGGCATTCCCAAATTAA 1104 0.4882 METVISNQSPPTILKSVKDKEEEESLLGQAEIWKYMTCFTDSVALKCAVQLRIADIIDRYGQPISLSKIIDNIEDAPSPDASLLLRIMRVLVRKNIFSAVKSDNGEILYGNTRASKWILQDTKMTLAPMLLLENHPLHLNPAHFISDIIREGTDKGTAFFRCHGHEQFDLTGLDPEYNKLFNEGMVCTARTVIKAVIDXXXXNKIESLVDVGGGLGGSLSEIVRAYPHIKGINFDLPHVVATAPQYDGIIHVGGDMFVSVPKADAIYMKWILHDWSDQHCIKILKNCRKAIPENGKVIIVDHVLQPEGNDLFDDTGFAFDMMLLAHNAGGKERTEENWKWLFAETGFPRYNIIKIKALPSIIEAFPN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90971g00003 367 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 33 366 IPR016461 GO:0008168
Stsc90971g00003 367 PIRSF O-mtase 12 367 IPR016461 GO:0008168
Stsc90971g00003 367 Gene3D - 14 118 IPR036388 -
Stsc90971g00003 367 PANTHER O-METHYLTRANSFERASE 32 349 IPR016461 GO:0008168
Stsc90971g00003 367 Pfam Dimerisation domain 44 92 IPR012967 GO:0046983
Stsc90971g00003 367 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 124 364 IPR029063 -
Stsc90971g00003 367 FunFam O-methyltransferase family protein 120 365 - -
Stsc90971g00003 367 Pfam O-methyltransferase domain 146 347 IPR001077 GO:0008171
Stsc90971g00003 367 SUPERFAMILY "Winged helix" DNA-binding domain 22 121 IPR036390 -
Stsc90971g00003 367 Gene3D Vaccinia Virus protein VP39 120 367 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90971g00003 Stsc-Chr90971 24622 33319 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90971g00003 43 353 Monolignol Biosynthesis Gene Families AT5G54160 39.375 2.62e-74 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90971g00003 K22588 - gmx:100800801 597.816