Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90966g00005 ATGCAGGTGAGTGTTCCATGCAGCAGCATGTCAACGGTGGTGACAGTGAGATGTGGACACTGCACAAGCCTTCTCTCTGTTAATATGATGAAAGCTTCTTTTGTCCCTTTACACCTCTTAGCTTCTCTTTCTACTCACCACCATCACCATGATCACCACCAAATTCAGGTAAAAGAGAGTAGCAGTGCAGAAGAAGAGGATGCAAACAAGATCATCACAATGAACAGTAATGGATCCATGATGATGATGATGAACTACTATTCTGATGATTGTGAAGAAGAGGATGTAACAAACACAATCAACAATGTTGTCAACAAACCCCCAGAGAAAAGACAGCGAACTCCATCAGCTTATAACCGATTCATCAAAGAAGAGATTAAAAGGCTAAAGGCAGAAAACCCTGACATGGCACACAAGGAGGCTTTCAGCACTGCTGCAAAAAATTGGGCTAATTTTCCACCAAGTGAGTGCAATGGAGATGAAGAAATTTGCAATAATCAGAAAGAGCACTTTGCGGATCTGGACTCCCAAGTGGACCCTCTTTCTCAATCTCAAGAGAGCATCAATAATAATGAAGAAGGTCAAAGTTTCCATGGAAGAAAGATGCAAAGGAATTCCATCATGGCAAGGACACAACTTGAATGA 645 0.4171 MQVSVPCSSMSTVVTVRCGHCTSLLSVNMMKASFVPLHLLASLSTHHHHHDHHQIQVKESSSAEEEDANKIITMNSNGSMMMMMNYYSDDCEEEDVTNTINNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPSECNGDEEICNNQKEHFADLDSQVDPLSQSQESINNNEEGQSFHGRKMQRNSIMARTQLE 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90966g00005 214 SUPERFAMILY HMG-box 98 156 IPR036910 -
Stsc90966g00005 214 CDD HMG-box_SF 113 156 - -
Stsc90966g00005 214 Gene3D High mobility group box domain 97 176 IPR036910 -
Stsc90966g00005 214 PANTHER PROTEIN YABBY 6-RELATED 2 167 IPR006780 GO:0007275
Stsc90966g00005 214 Pfam YABBY protein 2 154 IPR006780 GO:0007275
Stsc90966g00005 214 FunFam Axial regulator YABBY 4 100 167 - -
Stsc90966g00005 214 MobiDBLite consensus disorder prediction 177 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90966g00005 Stsc-Chr90966 30286 32252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90966g00005 1 214 C2C2-YABBY Transcription Factor Family AT1G23420 50.230 2.68e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Stsc90966g00005 YABBY 5.6e-53 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90966g00005 K25796 - gmx:100806755 231.876