Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90963g00001 ATGGTTGGAACAGTTGGTGGTAAAGACTTGCCCTTAGAGCCTTCAGAAGAAGAATTCATGGCTTTGTTGCGCAACGGTATCATCCTCTGCACTGCTCTTAACAAAATCCAACCTGGTGCTGTGCCCAAGGTTGTTGAAACCCCTAGCGATGCTGATCTTCCTTCTGATGGCATAGCAATATCTGTGTATCAGTGCTTTGAAAATATGAAGAACTTTCTTGTTGCTGCTGAGCGATTGGGGCTTCCTACCTTTGAAACTTCTGATTTGGAACCGGGAGGTACATTTTCAAGGGTAGTAGATTGTATTCTAGCAATCAAGGCATATAGTCAAGGCAATTTGGTTGGCAAAATCAGTTTATGGAGATATGGTAGTGGGAATAATTCAAGATCTTCTAATCGTGTTAAAGCACCTAAGGAGTCTTTGTCAAGGGCTGCATCTACAGGAGATAGAAATAGAGCCAATGGTGATCTCGGCCACGACCACTGCAAATCGGATTCCATGTCTTCCTTGAGTGCACTAGTTCATGAATTCATTCGCGATAAGAATCAAGAAGAAATTCCGGAGTTGATTGAGTCCTTGCTTGGCAAAGTCATGGAGGAGTTTGAACAACGCATGCTTATCCAACAAGAAATGAACAAAATAACTCAAGAAGATAAGCCATCATCTGAAGTGCGTAGTTTGGTATTAAAGCCTTCTGATGATGATGAAGAGATGGTTGATAATGAAGAATTGGAAGTTAAACAAGAGGAAAATGTTGACAAAGAACGAAGCAGAAAGCTTTTGGAGCAGCTAGAGTTAGATCAACACCAAAACAAAGGCGACCTTGAACTCGATGTTAATGATATTCAGGAATTGAAAGATATGTTTAATCAAACAAAAACAGGAATGGAATTTCTGCAAAAGAAACACCAGGAGGAGATAATCCATCTAAGTAAGCAGCTGCTTAGCGTAGCTTCTGCTGCTTCTGGATATCAGCGAGTCCTCGAAGAAAACCGCAAGTTATACAATCAAGTGCAAGATCTAAAAGGAAATATAAGGGTATACTGCAGAGTTAGGCCTTGCCATCAGAAACAAGGCAGTGTGAGTAACATAGATGAAGGAAGCATCTCACTCTTAGTACCATCAAAGAATGGGAAAGATGGGAAGAAGACATTTACTTTCAACAGATGTTTCGGTCCTAATTCGACTCAAGCGGAGGTCTTTGCCGATACTCAACCTTTGATACGTTCGGTTCTGGATGGCTACAATGTCTGCATATTTGCCTATGGCCAGACAGGCTCAGGAAAAACACACACAATGTCTGGACCAAACAATCCTGATGAGGAAACAGTGGGTGTTAACTACCGTGCGCTTCGAGATCTTTTCCTTATCTCAGAACAAAGGAAAGACACCATTCACTATGAAATCAAAGTTCAGATGCTTGAGATTTATAATGAGACAGTTAGAGACCTCCTATCCACAGATGGTGTTCAGAGAAGATATCCTTTTTTCTCTGCTAACTAG 1503 0.4125 MVGTVGGKDLPLEPSEEEFMALLRNGIILCTALNKIQPGAVPKVVETPSDADLPSDGIAISVYQCFENMKNFLVAAERLGLPTFETSDLEPGGTFSRVVDCILAIKAYSQGNLVGKISLWRYGSGNNSRSSNRVKAPKESLSRAASTGDRNRANGDLGHDHCKSDSMSSLSALVHEFIRDKNQEEIPELIESLLGKVMEEFEQRMLIQQEMNKITQEDKPSSEVRSLVLKPSDDDEEMVDNEELEVKQEENVDKERSRKLLEQLELDQHQNKGDLELDVNDIQELKDMFNQTKTGMEFLQKKHQEEIIHLSKQLLSVASAASGYQRVLEENRKLYNQVQDLKGNIRVYCRVRPCHQKQGSVSNIDEGSISLLVPSKNGKDGKKTFTFNRCFGPNSTQAEVFADTQPLIRSVLDGYNVCIFAYGQTGSGKTHTMSGPNNPDEETVGVNYRALRDLFLISEQRKDTIHYEIKVQMLEIYNETVRDLLSTDGVQRRYPFFSAN 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90963g00001 500 MobiDBLite consensus disorder prediction 232 252 - -
Stsc90963g00001 500 Pfam Calponin homology (CH) domain 17 110 IPR001715 GO:0005515
Stsc90963g00001 500 MobiDBLite consensus disorder prediction 126 160 - -
Stsc90963g00001 500 Coils Coil 244 267 - -
Stsc90963g00001 500 ProSiteProfiles Calponin homology (CH) domain profile. 1 110 IPR001715 GO:0005515
Stsc90963g00001 500 SMART kinesin_4 342 494 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc90963g00001 500 Coils Coil 324 344 - -
Stsc90963g00001 500 Gene3D Kinesin motor domain 285 495 IPR036961 -
Stsc90963g00001 500 ProSiteProfiles Kinesin motor domain profile. 344 500 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc90963g00001 500 PANTHER KINESIN-LIKE PROTEIN KLP-3 11 490 IPR027640 GO:0003777|GO:0007018
Stsc90963g00001 500 SUPERFAMILY Calponin-homology domain, CH-domain 5 129 IPR036872 -
Stsc90963g00001 500 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 286 494 - -
Stsc90963g00001 500 Pfam Microtubule binding 330 485 IPR031852 GO:0008017
Stsc90963g00001 500 Gene3D - 1 111 IPR036872 -
Stsc90963g00001 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 488 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90963g00001 Stsc-Chr90963 6765 10162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90963g00001 273 492 Calmodulin-binding Proteins AT5G65930 33.921 2.52e-32 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90963g00001 K10406 - gmx:100808197 544.273