Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90962g00003 ATGGCAAGTGTCAAAGTCATTTCAACAAGCACAATACAAGCAACAAACAAGTATTCAAGGGTGGTGGTGGTGGATGAGGAGGTACACTTGACTCCATGGGATTTCCAACTCCTCCTAGTTGATCCCATTCAAAAAGGCCTCCTCTTCCATAACAACCCCATAACTACTCCACCACCAATCATAATCCAACACCTCAAACATTCCCTTTCATCCACCCTTTCTTTCTTCCCACCCCTCGCGGGACGCCTTTCCGTTACGGAACACCACGACAACACTTCCTCCGTTTCCGTTATTTGTAACAACTCCGGGGCGCTCTTTGTCCATGCCGTTGCGGATAACTACTCCGTCAACGACATCGTTAGTTCCGTTTACACTCCACGCTTTGTGCACTCTTTGTTCCCGCTCAACAGAATTAGAAACTACGAAGGAATAACAAAGCCGTTGTTGGCGGTTCAAGTCACCGAGCTCAACGACGGTTACTTCATTGGCTGCACCATGAACCATGTTGTTGGAGACGGAACTTCCTTTTGGCATTTCATGAACTCCTGGGCTGAGATCTCACGTGGTAAAGAAGAATTGTCCAAGCCTCCTGTGCTTGAGCGTTGGTTCCTTGACGGCGGCGTTCACGGCTGCTCCGCCGCTGCCATACGTGTTCCTTTGACGAAGGAGAAGATGAAACAACGTGGCTACGACGGTTTCTTCTCAGATCTGCAACGCGAGAGGGTTTTCCATTTCACTAAAGACAAAATCGCCGAACTCAAGGCAAAAGCCAACGCTGAAATTGAAACCGAAACCGACGAAGGCAAAAACAAAGTATCTTCACTGCAAGCGCTTTTGACTCACCTATGGAGATCCGTGGTTCGGAACCAGGCTCTTGATCCCGAAGAAGAGGTGAATTACAAGTTGCTGGTAGGTGGTAGGGGGAGAATGAAGAATCCGCCATTGGCGGAAAACTATTTTGGAAATGCGGTGCAGGACGGAACAGTGACGGTGAAGGTTCGAGAGCTTCTAGAAGAAGGAGGGCTTGGAAAGGGTGCGTTGGAGATGAACAAGATGGTTGGTTTGTACACGGAGGAGAAGATGAAGAGCTACTATAGGGGTTGGGTGAAGAACCCTAGGCTTCTGACGGAGGGAGGTGTGGCTGGCTATGCTTTAGTGACGAGCAGCTCGCCGAGATTTGATGTTTATGGGAATGATTTTGGGTGGGGGAAGCCGGTGGCGGTGAGGAGCGGAGCCGGGAACAAAAGCCATGGTAAGATAACGGTTTTTGCTGGGGCGGAAGGTGGTGTTGATATTGAAGTTTGTCTTTCATATGAGATATTGGAGGCCATGGGTAATGATCATGAGTTTATGGATGCAGTGTCCGCCACTTAA 1374 0.4913 MASVKVISTSTIQATNKYSRVVVVDEEVHLTPWDFQLLLVDPIQKGLLFHNNPITTPPPIIIQHLKHSLSSTLSFFPPLAGRLSVTEHHDNTSSVSVICNNSGALFVHAVADNYSVNDIVSSVYTPRFVHSLFPLNRIRNYEGITKPLLAVQVTELNDGYFIGCTMNHVVGDGTSFWHFMNSWAEISRGKEELSKPPVLERWFLDGGVHGCSAAAIRVPLTKEKMKQRGYDGFFSDLQRERVFHFTKDKIAELKAKANAEIETETDEGKNKVSSLQALLTHLWRSVVRNQALDPEEEVNYKLLVGGRGRMKNPPLAENYFGNAVQDGTVTVKVRELLEEGGLGKGALEMNKMVGLYTEEKMKSYYRGWVKNPRLLTEGGVAGYALVTSSSPRFDVYGNDFGWGKPVAVRSGAGNKSHGKITVFAGAEGGVDIEVCLSYEILEAMGNDHEFMDAVSAT 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90962g00003 457 Gene3D - 238 448 IPR023213 -
Stsc90962g00003 457 Gene3D - 1 217 IPR023213 -
Stsc90962g00003 457 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 6 451 - -
Stsc90962g00003 457 Pfam Transferase family 3 451 - -
Stsc90962g00003 457 Coils Coil 247 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90962g00003 Stsc-Chr90962 21649 23022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90962g00003 63 411 Monolignol Biosynthesis Gene Families AT5G48930 28.571 5.96e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90962g00003 - - jre:108985765 494.967