Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90960g00004 ATGGAAGCAGGGAAGGAGGAGGCACTCAAAGCAATAGAGGTTGCTGAGAAGCGATTTGCTCAGAGAGATTTTGCAGGCGCAAAAAACTATGCCATAAAAGCTAGGACGCTATATCCTGGATTGGAGGGTATATCTCAAATGGTGACCACATTTGAGGTTTACATTGCTTCTGAGATTAAACACAATGGTGAACTAGATTACTATTCGATTCTTGGATTGAAACCTTCTGCTGATAAAGAGGCTATCAAGAGACAGTACAAGAAGATGGCTGTGTTGCTTCATCCTGATAAGAACAAATGTGTGGGAGCTGATGGGGCGTTTAAGCTTGTTTCCGAGGCATGGACTTGGCTGTCAGATAGTGCTTTGCGCAGTACATATGATCTCAAGAGAAATGGACAGTTGGGTGGGATTACTCAGACAAATTTGTCTTCTGGCCACGCTACAGGTTATAGCAAATGTTCCAATTTGTCCTCTTCTCATGGTAGGCATGACACCTTTTGGACAATTTGCACCTCTTGTAAGGTTCAGTATGAGTATCTGCGCAAGTATGTGAACAAAAAACTTTCGTGTAAGAACTGCCGTGGTACTTTTGTTGCTGTTGAAACTGGGGCAGCGCCAGCAAATGGTTCATTTCCATATTGTCCTTGGTCCTATGTGCCTGGAAATGGGTATGGAAGTCATTCCTATGATGGAGTTGCTTATGTTCCAACCACTGCTGCCACCTATTTCAACGGCAATGGCGTCGCAGGATACCATTCTGGACATGGATATGATTATGTTTCAAATGTTTCATTTCAGTGGGGCTCTTCTGGACACGTTAATCAAAATGGACCAACTACCGTAACTACTGATTCTGTTTATCAAACCAATGGAAATGTGAAGAGAGGAAGACCAAAAATCAAGTCAGTTGACAAGATGCATCGTGTGGCCGAGACTGTGATCAACACACATTCAGATGTGTCGTTCGTTTATAATGAACAACAGGATCTTAAGATGGGTAGACCAGACAAGAAAAGGAAAGTAGTTGCACCAGACGAAAAGGGGTCAAAATGCGCTTCTGAATCATTTTTGGCTGATGGTAATGAAAGCCTTGGGCAAGGCCTGAAGGTTTCCTGCGGAAATGAAGTTCAAACCAAGCAGTGTTCCATGGCACCAGCTTTTGATGCGAGAAAATTATTGATTGAGAAGGCCAGGACAGAAATTAGAAAGAAACTGGAAGAGATGAAGTTGGCATCCGAAATTGCTGCAGCAGCAGCTGTCCGTGCGAGAGAGAAGTCTCAAGCTGAAGATGGTCAAGTAAAAAGAGAGACATGTAGAAGAACAGTTCTGAATGCTTCTGGTCATCAAGTGGAGCGCAAGAAAATTGGTCCAGCCACTATAACTGTCCCAGATTCTGACTTCCATGACTTCGATAAAGATAGGTCAGAGGAATGCTTCAAGCCAAAGCAAGTATGGGCCTTGTATGATGAGGAGGATGGAATGCCACGATTATATTGCCTGATCCGTGAAATTATCTCAGTTGATCCATTCAAGATTCACATTAGTTACTTAAGTTCCAAAACTGATAGTGAGTTTGGCTCAGTAAACTGGCTTGATTCAGGTTTTACCAAATCTTGTGGAAATTTCAGGGCTTGGAATTCTGATGTTGTTGACCAAGTTAACATCTTCTCCCATCTTCTAAGTAAGGAGAAGGCTGGTCGAGGTGGTTGCGTTCGACTATATCCCAGAAGTGGAGATATTTGGGCCGTTTATCGAAATTGGTCACCAGACTGGAACAGATCTACTCCAGATGAAGTGAGGCATCAGTATGAAATGGTGGAAGTGCTGGATNNNNNNNNNNATTACTCTGAGGAACTTGGTGTGTGCGTTTCGCCCCTTATCAAGCTGGCTGGATATAAGACAGTTTATCAAAGGAATACAGATAAAAGTGCCATCAGATGGATACCAAGGAGAGAAATGCTGCGCTTTTCGCACCAAGTGCCTTCTTGGTTACTTAAGGGGGAGGCAGAAAATTTGCCTGAAAGGTGTTGGGATCTTGATCCGGCTGCGACTCCGGATGACCTTCTTCATGCAGCAACTGCAGAATCAGATGCTCTTTAG 2100 0.4338 MEAGKEEALKAIEVAEKRFAQRDFAGAKNYAIKARTLYPGLEGISQMVTTFEVYIASEIKHNGELDYYSILGLKPSADKEAIKRQYKKMAVLLHPDKNKCVGADGAFKLVSEAWTWLSDSALRSTYDLKRNGQLGGITQTNLSSGHATGYSKCSNLSSSHGRHDTFWTICTSCKVQYEYLRKYVNKKLSCKNCRGTFVAVETGAAPANGSFPYCPWSYVPGNGYGSHSYDGVAYVPTTAATYFNGNGVAGYHSGHGYDYVSNVSFQWGSSGHVNQNGPTTVTTDSVYQTNGNVKRGRPKIKSVDKMHRVAETVINTHSDVSFVYNEQQDLKMGRPDKKRKVVAPDEKGSKCASESFLADGNESLGQGLKVSCGNEVQTKQCSMAPAFDARKLLIEKARTEIRKKLEEMKLASEIAAAAAVRAREKSQAEDGQVKRETCRRTVLNASGHQVERKKIGPATITVPDSDFHDFDKDRSEECFKPKQVWALYDEEDGMPRLYCLIREIISVDPFKIHISYLSSKTDSEFGSVNWLDSGFTKSCGNFRAWNSDVVDQVNIFSHLLSKEKAGRGGCVRLYPRSGDIWAVYRNWSPDWNRSTPDEVRHQYEMVEVLDXXXXYSEELGVCVSPLIKLAGYKTVYQRNTDKSAIRWIPRREMLRFSHQVPSWLLKGEAENLPERCWDLDPAATPDDLLHAATAESDAL 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90960g00004 699 Pfam DnaJ domain 66 127 IPR001623 -
Stsc90960g00004 699 PRINTS DnaJ domain signature 68 86 IPR001623 -
Stsc90960g00004 699 PRINTS DnaJ domain signature 102 122 IPR001623 -
Stsc90960g00004 699 PRINTS DnaJ domain signature 86 101 IPR001623 -
Stsc90960g00004 699 SUPERFAMILY Chaperone J-domain 58 131 IPR036869 -
Stsc90960g00004 699 Gene3D DnaJ domain 55 145 IPR036869 -
Stsc90960g00004 699 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Stsc90960g00004 699 SMART dnaj_3 65 122 IPR001623 -
Stsc90960g00004 699 CDD DnaJ 66 119 IPR001623 -
Stsc90960g00004 699 PANTHER BNAC03G44070D PROTEIN 1 685 - -
Stsc90960g00004 699 Pfam Domain of unknown function (DUF3444) 458 668 IPR024593 -
Stsc90960g00004 699 Coils Coil 394 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90960g00004 Stsc-Chr90960 11303 14687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90960g00004 5 303 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.308 4.86e-33 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90960g00004 - - gmx:100792639 1164.44