Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90960g00001 ATGGATTGCATTTCTGGTTTTGCCTCTTCATTTTCAAGAGATTTGGTGGTAGGAACAACAAATCAATTGCGCTATCCTTGTTGCTTTAATGATTTCCTTAAAGACCTTGAACAAGAGGAAGAAAAGTTGATCACAACAAGGAACAGTGTTGAAGACCGTGTTAAACATGCCAGAAAACAAGTAATAAAGAATGCTGAAGTTGTTAATGCATGGTTGGAGAAATCTAACCCACTCAAGGATAAAGTAGAGCACTTAATAAAGAAGGCAAGAACAAACAGAAGTTGCTGTTTTGGCTACTGTCCAAATTGGATCTGGAAGTATCATCTAGCCAAGAAGTTAGCAAAGAGAAGAAAGGAAGTTGAAATGTGTGTTCAAGAAGGTAAAATGTATATACAATATGAAAGGATTGCTTCACTTTCAAGCAAGCAACATTTCTTGGAAAACTGTTTGAAGTTTGATAGCAGAGAAGGTGACTATGAGGAGCTTCTAGAGGCATTAAAAGATGATGATGTTACCACGATTGGATTGTATGGCATGGGAGGTTGTGGTAAAACCACCATGGCTATGGAACTTATGAGGACTGCAGAAGCTGAGAATCTATTTGATAAAGTGCTTTTTGTGTCTGTGTCTAATATAGTAGATGTCAGGAAGATCCAAGATAGAATTGCCAGTGCTTTGCAGTTTCAGTTTCCAGAAGAAGGAGAGACGGAGAGAGCGCAGCGCTTGTGTTCGAGACTGAATCTTGATGACCAGAGAACTCTTGTCATTCTAGATGATTTATGGCAATCACTTGATTTTGGTGTTATAGGAATTCCATCAGGTCAAAACCATGGAAACTGCAAGGTTCTCATCACAACACAATATGAAACAGTTTGTAGTCTGATGAATTGTCAAAGAATGGTTTACCTATCAACCTTAACCGACGAAGAAGCGTGGGAGCTTTTCCAGAATCAAGCACATCTATCCGAAAGCACTTCGGATAACTTGAAGCATCTGGGAAGACTGATTTCAGATGAATGCAAAGGATTGCCTGTTGCTATTGCTGCTCTGGCTAGCACTTTGAAAGGCAAGGCTGAAGATGACTGGAATGTTGCATTGGTTAGATTGAAGAATTCAATTCCAGTGAATATTGAGAGAGGTCTGAAAGATCCTTACAAATGCTTCAGGGTAAGCTATGATAACTTGGATACCAAGGAAGCTAAATCACTTTTCTTGCTGTGTTCTGTGTTCCCTGAAGGTTATGAAATCCCGGTTGAGACTCTAATTAGATTTGCAATAGGACTGGGCATGGTTGGAGAAGTTTGGTCATATGAGGAGGCAAGGAATGAAGTATGTGCAGCTAAGAACAAACTCATAAGTTCTTGTTTGCTATCAGATATTGGAGGAGGAAAGCATGTCAAGATGCATGATTTGGTTCGCGACGTAGCCCTTTGCATTGCAAGCAATGAAAACAAGGTGATCAAGTGTATGATGGAAAAGAATGCAACTTTGGAATGCAGATCATCAATCAGATATCTCTTGTGTAAGGAATTTCCAAGTGAACTAAACCGTTCTAGTTGTTAG 1563 0.3948 MDCISGFASSFSRDLVVGTTNQLRYPCCFNDFLKDLEQEEEKLITTRNSVEDRVKHARKQVIKNAEVVNAWLEKSNPLKDKVEHLIKKARTNRSCCFGYCPNWIWKYHLAKKLAKRRKEVEMCVQEGKMYIQYERIASLSSKQHFLENCLKFDSREGDYEELLEALKDDDVTTIGLYGMGGCGKTTMAMELMRTAEAENLFDKVLFVSVSNIVDVRKIQDRIASALQFQFPEEGETERAQRLCSRLNLDDQRTLVILDDLWQSLDFGVIGIPSGQNHGNCKVLITTQYETVCSLMNCQRMVYLSTLTDEEAWELFQNQAHLSESTSDNLKHLGRLISDECKGLPVAIAALASTLKGKAEDDWNVALVRLKNSIPVNIERGLKDPYKCFRVSYDNLDTKEAKSLFLLCSVFPEGYEIPVETLIRFAIGLGMVGEVWSYEEARNEVCAAKNKLISSCLLSDIGGGKHVKMHDLVRDVALCIASNENKVIKCMMEKNATLECRSSIRYLLCKEFPSELNRSSC 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90960g00001 520 PRINTS Disease resistance protein signature 247 261 - -
Stsc90960g00001 520 PRINTS Disease resistance protein signature 340 354 - -
Stsc90960g00001 520 PRINTS Disease resistance protein signature 173 188 - -
Stsc90960g00001 520 Pfam NB-ARC domain 156 387 IPR002182 GO:0043531
Stsc90960g00001 520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 407 IPR027417 -
Stsc90960g00001 520 Coils Coil 33 53 - -
Stsc90960g00001 520 FunFam Probable disease resistance protein At1g61300 144 299 - -
Stsc90960g00001 520 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 24 513 - -
Stsc90960g00001 520 Gene3D - 305 391 IPR042197 -
Stsc90960g00001 520 Gene3D - 392 477 IPR036388 -
Stsc90960g00001 520 Gene3D - 138 303 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90960g00001 Stsc-Chr90960 448 2010 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90960g00001 155 507 WRKY Transcription Factor Family AT5G45050 26.158 9.00e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90960g00001 - - adu:107496081 988.023