Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90957g00002 ATGAGCGTGAAGCTGAGGCTCTTCATATTATTATCTTTCATGATCATTGGAGCATTGTTCTCCGGTGTTGAGTCTGAACCATTGGAAGATAAACAAGCTTTGCTTGATTTCTATCACAACATTGATCACCCAAAGCATCTCAATTGGGATTCCAAGAATTCTGTATGCAAGAGCTGGACAGGAGTTACCTGTGATTCTAACCAATCCCGAGTGGTCGCCCTTCGGCTACCGCGAGCCGGATTAATTGGTCTCATCCCATCCAACACTCTCAGCCGCCTCTCAGCGCTTCAGATTCTGAATCTCGAATCAAATGGCATAACTGGTTCTTTTCCTACTGGTTTCTCTAAGCTGAAGGGCTTGACTTCTATTTACCTGCAAGATAACAAGTTTTCTGGACCATTGCCATTGGATTTTTCTGTTTGGAAAAATCTTACCACAGCAGATTTTTCCAACAATACTTTCATTGGGAGAATCCCTTTCTCAATTTCAAAGTTGACTCACCTCAGTTCTTTAATTTTAGCCAACAACTCTCTTTCTGGTGAAATTCCTGACCTCAATGTTCCTAGCTTGCAAGAGCTGAATTTGGCCAACAATAACCTTAGTGGATTTGTGCCTAAATCCCTTCAGAGATTTCCAAGTTGGGTCTTTTCTGGTAACAAGCTTAATCTTAATCATAATCCCACCTCTGAATATGCATTTGCTAATTCCCCTCTTCAACAACCAAAAAAATCTCATCCAAGAAAGAAAAACAAAAGGCTTAGTGAATCAGCATTGCTTGGTATCGTTATAGCTGTTAGTCTGGTGGGATTTGCAGCCATTGCGGCTTTCATGATTGTGTTCTGTTATAAGAAAGGTGGTGGTGGAGGAGGTGGAGAGTCAGTTATGAAGTCCCATAAAACAGAATTCTCGGCGAAGACGGAAGCTTCTGCAAGTGGAGACAGTAACAAAATCGTTTTCTTTGAAGGCTGCAATATTGCATTTGACTTGGAGGACTTGTTGAGAGCCTCTGCTGAGGTTCTTGGAAAGGGCACGTTTGGAACTGCGTATAAGGCTGCTATAGAGGATGCAACGACGGTGGCGGTGAAGAGGTTGAAAGATGTAACTGTCGGAAAACGTGAGTTCGAGCAGCAGATGGAGGTTGTAGGGAGAATTAGGCATGACAACTTGGCTGCTCTAAGAGCTTATTATTACTCAAAAGAGGAGAAACTTCTGGTATATGATTACTATGAACAGGGCAATGTTTCTTCAATGTTACACGGCAAGAGAGGGGAAGACAGGGTTTCGTTAGATTGGGAAAGCCGGCTAAGGATCGCGATCGGCACGGCAAGAGGGATTACTCATATCCATGTCCAAAACGGCGGGAAACTAATCCACGGTAACATCAAATCCTCAAATATCTTTCTCAATTCCCAGGGATATGGTTGCATATCGGACACCGGCCTGGCAACATTAATGAGCCCAATACCACCAGCAGCACTAAGGGCAGCAGGATACCGTGCACCGGAAGTAACCGACACCAGGAAAGCCACAGCAGCAGCCGATGTCTACAGTTTCGGAGTCCTTCTTCTAGAGCTCCTAACAAGGAGATCTCCAATGCACGCCACTGGTGGAGAGGAAGTAGTCCACTTAGTTAGGTGGGTTAACTCTGTTGTTAGAGAAGAGTGGACTGCAGAAGTGTTTGATGTGGAGTTACTAAAGTACCCTAACATAGAGGAAGAAATGGTTGAGATGCTACAATTGGGGATGGCATGTGTTGCTAGGGTTCCAGATAAGAGACCAACAATGGTGGAAGTAGTGAGAATGGTAGAGGAAATTCGAGTACATAGTGGGAATAGACCGTCCACGGAATCTAGATCAGAGGGTTCTACACCAAATGCATTTATTACACAGTGA 1893 0.4411 MSVKLRLFILLSFMIIGALFSGVESEPLEDKQALLDFYHNIDHPKHLNWDSKNSVCKSWTGVTCDSNQSRVVALRLPRAGLIGLIPSNTLSRLSALQILNLESNGITGSFPTGFSKLKGLTSIYLQDNKFSGPLPLDFSVWKNLTTADFSNNTFIGRIPFSISKLTHLSSLILANNSLSGEIPDLNVPSLQELNLANNNLSGFVPKSLQRFPSWVFSGNKLNLNHNPTSEYAFANSPLQQPKKSHPRKKNKRLSESALLGIVIAVSLVGFAAIAAFMIVFCYKKGGGGGGGESVMKSHKTEFSAKTEASASGDSNKIVFFEGCNIAFDLEDLLRASAEVLGKGTFGTAYKAAIEDATTVAVKRLKDVTVGKREFEQQMEVVGRIRHDNLAALRAYYYSKEEKLLVYDYYEQGNVSSMLHGKRGEDRVSLDWESRLRIAIGTARGITHIHVQNGGKLIHGNIKSSNIFLNSQGYGCISDTGLATLMSPIPPAALRAAGYRAPEVTDTRKATAAADVYSFGVLLLELLTRRSPMHATGGEEVVHLVRWVNSVVREEWTAEVFDVELLKYPNIEEEMVEMLQLGMACVARVPDKRPTMVEVVRMVEEIRVHSGNRPSTESRSEGSTPNAFITQ 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90957g00002 630 Gene3D Ribonuclease Inhibitor 28 242 IPR032675 -
Stsc90957g00002 630 Pfam Protein kinase domain 337 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90957g00002 630 ProSitePatterns Protein kinases ATP-binding region signature. 340 371 IPR017441 GO:0005524
Stsc90957g00002 630 SUPERFAMILY L domain-like 30 230 - -
Stsc90957g00002 630 FunFam Probable inactive receptor kinase RLK902 27 186 - -
Stsc90957g00002 630 Pfam Leucine Rich Repeat 189 210 IPR001611 GO:0005515
Stsc90957g00002 630 Gene3D Transferase(Phosphotransferase) domain 1 410 622 - -
Stsc90957g00002 630 SUPERFAMILY Protein kinase-like (PK-like) 338 604 IPR011009 -
Stsc90957g00002 630 Gene3D Phosphorylase Kinase; domain 1 299 408 - -
Stsc90957g00002 630 PANTHER OS05G0588300 PROTEIN 8 613 - -
Stsc90957g00002 630 ProSiteProfiles Protein kinase domain profile. 334 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90957g00002 630 MobiDBLite consensus disorder prediction 607 630 - -
Stsc90957g00002 630 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Stsc90957g00002 630 Pfam Leucine rich repeat 82 130 IPR001611 GO:0005515
Stsc90957g00002 630 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 409 616 - -
Stsc90957g00002 630 MobiDBLite consensus disorder prediction 614 630 - -
Stsc90957g00002 630 FunFam pollen receptor-like kinase 1 303 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90957g00002 Stsc-Chr90957 10763 13727 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90957g00002 5 625 Receptor kinase-like Gene Family AT4G23740 54.348 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc90957g00002 Pkinase 2.3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90957g00002 - - aprc:113851984 870.922