Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90951g00002 ATGGACTTCCATTATCTGAAGCAATGGAGAAACCAGGATGAGTCAGAGGAACAACAACAACATTCTACAAAGATGCCAAAACTTCTCCCACCAGAATCTCATCAACAGCCTGCCTCTGCTCTCCCCTTGTTTGTACCTGAACCCAACAGCAAAGTCACCTGCACCCTGTCAGATTCAACACTTGCTCCTCCTCATACTACTACTGCTATCTCCAAATTCCCCAGAATGGGGAGTTACTTCAGCTTGTCACAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTGGCCGGTGCAGCTGTTCCTCCCGAGCTCCTTCAACCAATCAAAAAAAGCCTCTTCCATTCTTCTCCCTATTTCCTCCATCACACTCTCCAACACTATCAACCTGCAGCTCTTTTGCAATCAGGGTATTGGGGGAGAGCATCAATGGATCCGGAGCCAGGGCGGTGCCGGAGGACTGACGGGAAGAAGTGGCGGTGCTCGAGGGACGTGGTGGCGGGTCAGAAGTACTGCGAGCGCCACATGCATAGAGGTCGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACCACTGCTGGTGCTGGAACTGCTTTAGGCGTTGCTTCCTCATCTTCTTGTATCTCTTCACCGCCTCTTGCCACTGCCTCAATCAAATCCCCGTTTGATCTCCTTCATCTTAATAGTGAACGGTCCTCTGGGAGTGGAGGGACCAAGGAAGAAGAAAACAAGAGGGTGTTTGAAAATCAAGATAACCATCATCATGTGGGTGGGGATGGTTGCAGATCAGGTGGGCACATGCTGAGGCATTTCTTTGATGACTGGCCACGCTCACTGCATCAGGACCCTGAAAACACTGAAAGAAATGGTGGTGGTGGTGGAAATGGGAGAGTGAACTCAGCCACATCACTCTCTATTTCAATGCCTGGAAATAATGCTGTTTCTTCTTCGGATGTATCACTGAAATTGTCTACTGGGTATGGGGAGGATCCGTGTCCAAGAAATGGGAATGGTGGAGGTGCGGAGGCAGAGCAACTGCAGTTGAGTTGGGGCGGAAGCTGGAGTTCGGGGAATCAAGTGGCTTCAATGGGAGGACCACTTGCTGAGGCACTCAGATCATCCACTACCACATCATCTCCCACCAGTGTTCTGCATCACTTGCCTCGTGCTTCTTCCTCTCAGACCACCTTCATTACCACCTAG 1218 0.5041 MDFHYLKQWRNQDESEEQQQHSTKMPKLLPPESHQQPASALPLFVPEPNSKVTCTLSDSTLAPPHTTTAISKFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLFHSSPYFLHHTLQHYQPAALLQSGYWGRASMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTTAGAGTALGVASSSSCISSPPLATASIKSPFDLLHLNSERSSGSGGTKEEENKRVFENQDNHHHVGGDGCRSGGHMLRHFFDDWPRSLHQDPENTERNGGGGGNGRVNSATSLSISMPGNNAVSSSDVSLKLSTGYGEDPCPRNGNGGGAEAEQLQLSWGGSWSSGNQVASMGGPLAEALRSSTTTSSPTSVLHHLPRASSSQTTFITT 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90951g00002 405 ProSiteProfiles WRC domain profile. 148 192 IPR014977 -
Stsc90951g00002 405 SMART QLQ_2 78 114 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc90951g00002 405 MobiDBLite consensus disorder prediction 282 319 - -
Stsc90951g00002 405 Pfam WRC 149 191 IPR014977 -
Stsc90951g00002 405 PANTHER GROWTH-REGULATING FACTOR 5 33 320 IPR031137 GO:0005634|GO:0006351|GO:0032502
Stsc90951g00002 405 MobiDBLite consensus disorder prediction 373 405 - -
Stsc90951g00002 405 Pfam QLQ 80 112 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc90951g00002 405 MobiDBLite consensus disorder prediction 297 319 - -
Stsc90951g00002 405 ProSiteProfiles QLQ domain profile. 79 114 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc90951g00002 405 MobiDBLite consensus disorder prediction 8 39 - -
Stsc90951g00002 405 MobiDBLite consensus disorder prediction 374 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90951g00002 Stsc-Chr90951 14379 17115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90951g00002 1 392 GRF Transcription Factor Family AT3G52910 47.330 2.94e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Stsc90951g00002 WRC 2.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90951g00002 - - aip:107648821 714.916