Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90946g00004 ATGGCTCCCTACCATCTCCAACCTCATCACCCACTAGATGCTCTATACTGCTCAGAGGAAGAAGATCAATTAGAACAGGATGAGGTACTGCTCCCACCACAAGGGGACATGTTTTGGGATGATGAAGAGCTTGCGTGGTTCCTGGCCAGAGAGCAACACAACCCTCTCTGCCTTCAGTTAGAGTGTGCTCGCAAAGAAGCAGTTGAATGGATCCTCAAAGTGAGCTCACACTACTCTTTCTCTGCTCTCACTTCTCTTCTTGCCGCCAACTATCTTGACAGGTTCCTCTTCACTTTCTCCTCCAACAACCACAACAACAACAATAATAATAATAAGCCATGGATGACTCAGCTTGCTGCCGTGGCTTGTCTCTCCCTTGCGGCTAAGGTCGAAGAGACTCACCTTCCTCACTTACTAGACCTCCAAGTGGAGGATTGCAGATATGTGTTTGAAGCAAAAACAATTAAGAGGATGGAGATTTTGGTGCTTTCAACTCTCCGATGGAAGATGAATCCCGTCACTCCTCTCTCTTTTCTTGACTACATCACAAGAAGACTTGGATTATTATTCAACTCCAACCATTTTCTCACCAGATCCCAATCACTTCTTCTATCTACCCTTCCAGATTCGAGGTTCATGAGTTACCTTCCTTCTGTTATGGCAACAGCCACAATGGTGCATGTTATGAACAGCGTTGAATACAAAAAGGAAGCGATACGCATTCTTGGAACGAAGGAGGAGAAGGTGGATGAATGCTTGAAGGTGATATGGGAATGGGAACGGGAACAGGGGAAGAAACGCAAGTTTGGATGGGTTCCTGGGAGTCCAAACGGCGTCATGGATGTGTCGTTTAGCTCTGCCTCTGATGATAGCTCCAATGATTCATGGGCTCTGCTTCCTAATAATAATAATAATAATAATAATTCTTCTTCAGTCTCATCCTCACCGGAACCACAACCACCTTTGCCTAAGAAGACTAGGACTCTGCTAAACTCCCCATCAGATTTCATTTAA 1014 0.4517 MAPYHLQPHHPLDALYCSEEEDQLEQDEVLLPPQGDMFWDDEELAWFLAREQHNPLCLQLECARKEAVEWILKVSSHYSFSALTSLLAANYLDRFLFTFSSNNHNNNNNNNKPWMTQLAAVACLSLAAKVEETHLPHLLDLQVEDCRYVFEAKTIKRMEILVLSTLRWKMNPVTPLSFLDYITRRLGLLFNSNHFLTRSQSLLLSTLPDSRFMSYLPSVMATATMVHVMNSVEYKKEAIRILGTKEEKVDECLKVIWEWEREQGKKRKFGWVPGSPNGVMDVSFSSASDDSSNDSWALLPNNNNNNNNSSSVSSSPEPQPPLPKKTRTLLNSPSDFI 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90946g00004 337 SMART Cyclin_C_2 173 288 IPR004367 -
Stsc90946g00004 337 Pfam Cyclin, C-terminal domain 173 266 IPR004367 -
Stsc90946g00004 337 PANTHER CYCLINS 53 256 IPR039361 -
Stsc90946g00004 337 Pfam Cyclin, N-terminal domain 62 171 IPR006671 -
Stsc90946g00004 337 CDD CYCLIN_AtCycD-like_rpt2 173 256 - -
Stsc90946g00004 337 SUPERFAMILY Cyclin-like 156 261 IPR036915 -
Stsc90946g00004 337 FunFam D6-type cyclin 53 171 - -
Stsc90946g00004 337 SUPERFAMILY Cyclin-like 36 171 IPR036915 -
Stsc90946g00004 337 SMART cyclin_7 177 258 IPR013763 -
Stsc90946g00004 337 SMART cyclin_7 69 164 IPR013763 -
Stsc90946g00004 337 CDD CYCLIN_AtCycD-like_rpt1 63 168 - -
Stsc90946g00004 337 Gene3D - 172 254 - -
Stsc90946g00004 337 MobiDBLite consensus disorder prediction 282 337 - -
Stsc90946g00004 337 Gene3D - 63 171 - -
Stsc90946g00004 337 MobiDBLite consensus disorder prediction 282 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90946g00004 Stsc-Chr90946 30442 32131 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90946g00004 8 279 Core Cell Cycle Gene Families AT3G50070 44.884 8.06e-77 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90946g00004 K14505 - aprc:113874132 305.834