Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90946g00002 ATGCACAATATAACATTGTCACTGTTACTGGTCTTCTTGTTGTGGAATAATGCATCTTCTTCTTTGGTGCAGCATCCTCCTCCTCAAGATGCAGTCTCCCTAATGGCATTCAAGTCCAAAGCGGATCCAAACAACCGTCTCAACTTCACCAACACCACCGCCGCCGCACTCCACCGCTTCTGCCACTGGCAAGGCGTCCAATGCGCCGCAAACAGAGTGGTCCGCCTCGTCATCCAAGACATGGATCTCGGCGGCGTCTTCGCTCCGGACACACTCTCCAACCTCGACCAGCTCCGCGTCCTCAGCCTCCACAACAACTCCCTCACCGGACCCATACCGGACCTCTCCGGCCTCACAAACCTCAAGAGTCTCTTCCTCCACAACAACCACTTCAACGATTCTCTCCCTCCTTCACTCTTCTCCCTCCACCGCCTCCGAACCTTGGATTTCTCCCACAACAACCTCTCCGGTCACATTCCAACCGCCTTCACCAAACTCGACCGCCTCTACTCCCTTCGCTTGAGTTGGAACCGCTTCAACGGTACCGTTCCTCCTTTCAACCAGTCTTCTCTCAAAACCTTTGATGTCTCCGGCAACAACCTAACCGGCGCCATTCCCCTCACACCTACATTGTTCCGTTTCGATGCTTCCTCTTTCTCTTCCAACCCTGGACTCTGCGGGGAAATCATCCACAAGGAATGTCATCCCAGCGCGCCATTTTTCGGTCCCATTCCGGCGTCTTCACCTCCTCCAGCTGTGATTCTCGGCCAGAGCGCGAAGGTTCACGGCGTGAATGGCATTTTCCGGCAGCCGTACGAGAAGAAACGAGACAGGGCGGCGGTGATCGTTGGATTCTCGGCGGGAGTGGTTATCCTCGTGGTGTCGTTGGTATGCTTCGCGGTGACGTTGAGGAGGCAGAGGAGGAGCAGCGAGGGAGGAGAGAGCAAGAAGGAAGTAGCAATCAGGTCAGGATACATGGGATCCGATGCGGCAGCGACGGCGGAGGCAGCCGCAGCGGCGGCAATGCAGGTGGAGCAAGAAAGAGAGCTGGAGGAGAAGGTGCGAAGGGCAGAGGTAGTGGCGAAGAGTGGGAGCTTAGTATTCTGTGCGGGTGAGGCGCAGGTGTATACGCTGGAGCAGCTGATGAAGGGGTCTGCGGAGCTTTTAGGGAGAGGGTGTTTGGGGACTACTTACAAGGCGGTTCTTGATAACCGTCTGATCGTTACGGTTAAGAGGCTTGATGCTGGCAAGATGGCTTCACATGCAACAAAGGAGGTTTTTGAGAGACACATGGAATCAGTGGGTGGTCTTCGCCATCCTAATTTGGTTCCGGTTAGGGCTTTTTTTCAGGCCAAGGATGAGAGGCTTGTTATCTACGATTACCAACCCAATGGCAGCCTCTTCTCCCTCATTCACGGTTCTAGATCAAGCAGAGCAAGGCCATTGCACTGGACATCGTGCTTAAAAATAGCAGAAGACGTAGCACAGGGTTTGTCCTACATCCACCAAGCATGGAGATTGGTCCACGGCAATCTCAAATCTTCCAATGTCCTCCTTGGCCCTGATTTCGAGGCATGCATCACGGACTATTGCCTCACCCTTCTGGCCAACCCATCAAGCTTCCATGAAGATGCTGATTCCGCAGCGTACAGGGCTCCAGAGACTCGAAATCCCAAGCACCAGCCAACACCCAAATCAGACGTTTATTCATATGGGGTTCTGCTGATGGAGCTTCTCACTGGGAAATCTCCCTCCGAAATACCATTCTTGGTTCCCAGCGATATGTTGAGTTGGGTGAGGTCCATAAGGGATGACAATGGTGGTGATGATAGTAGAATGGACATGCTTCTTCAGGTGGCTACCACTTGTAGCTTGACATCGCCGGAGCAGAGGCCCACCATGTGGCAAGTGTTGAAGATGTTGCAGGAGATCAAGGAGATTGTATTATTGGAGAATAATAATACTGAATCCGACTTGCGTCAGTAG 1986 0.5312 MHNITLSLLLVFLLWNNASSSLVQHPPPQDAVSLMAFKSKADPNNRLNFTNTTAAALHRFCHWQGVQCAANRVVRLVIQDMDLGGVFAPDTLSNLDQLRVLSLHNNSLTGPIPDLSGLTNLKSLFLHNNHFNDSLPPSLFSLHRLRTLDFSHNNLSGHIPTAFTKLDRLYSLRLSWNRFNGTVPPFNQSSLKTFDVSGNNLTGAIPLTPTLFRFDASSFSSNPGLCGEIIHKECHPSAPFFGPIPASSPPPAVILGQSAKVHGVNGIFRQPYEKKRDRAAVIVGFSAGVVILVVSLVCFAVTLRRQRRSSEGGESKKEVAIRSGYMGSDAAATAEAAAAAAMQVEQERELEEKVRRAEVVAKSGSLVFCAGEAQVYTLEQLMKGSAELLGRGCLGTTYKAVLDNRLIVTVKRLDAGKMASHATKEVFERHMESVGGLRHPNLVPVRAFFQAKDERLVIYDYQPNGSLFSLIHGSRSSRARPLHWTSCLKIAEDVAQGLSYIHQAWRLVHGNLKSSNVLLGPDFEACITDYCLTLLANPSSFHEDADSAAYRAPETRNPKHQPTPKSDVYSYGVLLMELLTGKSPSEIPFLVPSDMLSWVRSIRDDNGGDDSRMDMLLQVATTCSLTSPEQRPTMWQVLKMLQEIKEIVLLENNNTESDLRQ 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90946g00002 661 Gene3D Ribonuclease Inhibitor 29 187 IPR032675 -
Stsc90946g00002 661 Gene3D Phosphorylase Kinase; domain 1 352 461 - -
Stsc90946g00002 661 SUPERFAMILY L domain-like 32 227 - -
Stsc90946g00002 661 Gene3D Transferase(Phosphotransferase) domain 1 463 659 - -
Stsc90946g00002 661 Pfam Protein kinase domain 387 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90946g00002 661 ProSiteProfiles Protein kinase domain profile. 383 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90946g00002 661 SUPERFAMILY Protein kinase-like (PK-like) 387 646 IPR011009 -
Stsc90946g00002 661 ProSiteProfiles Leucine-rich repeat profile. 97 119 IPR001611 GO:0005515
Stsc90946g00002 661 Gene3D Ribonuclease Inhibitor 188 234 IPR032675 -
Stsc90946g00002 661 FunFam Nuclear pore complex protein NUP107 28 185 - -
Stsc90946g00002 661 Pfam Leucine rich repeat 119 179 IPR001611 GO:0005515
Stsc90946g00002 661 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 645 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90946g00002 Stsc-Chr90946 11736 15558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90946g00002 29 651 Receptor kinase-like Gene Family AT5G43020 58.176 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc90946g00002 Pkinase 5.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90946g00002 - - gmx:100817172 929.472