Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90946g00001 ATGGCTACTTGCCTAGAACAGGGTTCATTGAGCAGAGCAACTGGAAGCACAAATATGAACAACCAATCAAGTCGATCGCATGCCATCTTCACGATTACATTAGAGCAAATGCGGAAGCTTAATATTCCCGGAGACAACCATTTGAATGATGCAATGAATGAAGAATATCTTTGTGCAAAATTGCACTTAGTGGATCTAGCTGGATCAGAACGAGCTAAAAGAACAGGTTCTGATGGTCTGCGTTTTAAAGAAGGAGTTCACATTAACAAAGGCCTTCTTGCACTTGGTAATGTTATTAGTGCACTTGGTGATGAAAAGAAGCGAAAGGAAGGTCTTCATGTTCCATACAGGGATAGTAAACTTACTAGGCTTTTGCAGGATTCACTTGGAGGTAACAGCAGAACTGTTATGATAGCCTGCATAAGTCCTGCTGATATTAATGCTGAGGAAACCCTTAACACTTTGAAGTATGCAAATCGTGCACGTAATATCCAAAATAAGCCTGTTATCAATAGAGACCCCATGTCAAATGAGATGCTAAAGATGCGCCAACAACTAGAGTATTTGCAGGCAGAACTTTGTGCTCGTTCTGGCAACTCTTCTGAGGAAGTTCAGGTCCTTAAGGAAAGAATTACTTGGCTTGAAGCTGCCAATGAAGATCTCTGCCGGGAACTTCATGAATACCGCAGCAGATGCTCTGTTGTAGAACAATGTGACAAGGATTCTTATGATAGTAGTGCATGCATTGTCAAGGCTGATGGTCTTAAGCGGAGCTTACCTATCATAGCACATGATTATCCAATGAGTGAAACAGCTGGTGAATCGAGGGAAATTGAAGAAGTAACCAAAGAGTGGGAGCACACACTTCTGCAAAATAGTATGGACAGAGAATTACACGAGTTGAATAAACGCTTGGAGCAGAAGGAGTCTGAGATGAAGCTTTTCGGTGTATCCGACACTGAACGAGAGAGAGATCATCTTCTGGCTGAAGTTGAAAACCTTGCTGCCAATTCTGATGGACAAACACAGAAACTAGAGGATATCCATGCCCAAAAACTGAAAGAACTTGAAGCTCAGATTCTTGAGCTAAAGAAGAAGCAAGAGAGCCAGGTCCAGCTTACCAAACAAAAGCAAAAAAGTGATGAAGCGGCAAAGAAACTGCAAGATGAGATTCAAGCTATAAAAGCCCAAAAGGTTCAATTGCAACACAGGATAAAACAAGAGGCAGAGCAGTTTCGACAATGGAAGGCTTCTAGAGAGAAAGAGTTGTTGCAGTTAAGGAAAGAAGGAAGAAGAAATGAGTATGAAAGGCATAAGCTGCAAGCTTTAAATCAGCGCCAGAAAATGGTCCTTCAGAGAAAAACCGAAGAGGCTGCAATGGCCACCAAGAGGTTAAAGGAGTTGTTAGAAGCTCGTAAAGCTTCTAGCCGAGACACTTCAGTTACAATGAATGGAAGTGGAACAAATAGCCAGAGCAATGAGAAGTCTTTACAGCGGTGGCTTGATCACGAACTAGAAGTCATGGTCAAGGAGCATGAAGTTCGTTTTGAATACGAGAAACAAAGCGAAGTGCGAGCTGCCCTTGCTGAGGAATTAGCAATGTTGAAGCAAGTAAATGAATTTGCTGCTAAAGGTCTCAGTCCTCCGAAAGGAAAGAATGGGTTTGCCAGAGCATCCTCCATGTCACCAAATGCAAGAATGGCCAGAATAGCTTCATTGGAGAGCATGCTAAGCATATCATCTAATTCACTTGTGGCAATGGCTTCTCAGCTTTCCGAGGCAGAAGAACGAGAACGGGCCTTCACGAATCGGGGACGCTGGAATCAGTTGCGCTCAATGGGAGAAGCCAAGAATTTGCTTCAATATATGTTCAATTCGGTCGCAGATGCTAGGTGCCAACTATGGGAGAGAGACATGGAGATCAGGGAAATGAAAGATCAAATCAAAGAACTTGTTGGTCTGTTACGCCAAAGTGAGATGAAGAGAAAGGAAACTGAGAAGGAGCTAAAGATGAGAGAGCAAGCGGTTGCAACCACGTTGGCTACACCAGCTTCTGGAAACACTCCAAATTCATTGAAACACTATGCTGAGGATATGAAGGATCCCTTATCTCCAATGTCTGTGCCAGTACCAAAACAGCTAAAATTTACACCAGGGGTTGTTAATGGCTCTGTAAGAGAATCGACAGCCATAGATCAGAGTAGAAGGATGGTACCTATCGGGCATCTCTCGATGAAGAAACTAGCAATTGCAGGACAAGCTTCAGGCAAACTATGGAGGTGGAAACGAAGTCATCATCAATGGCTGCTACAATTCAAGTGGAAGTGGCAGAAGCCATGGAGATTATCAGAATGGATTCGGCACAGTGATGAGACAATAATGAGATCAAAGCCACGCTCGCAGGCTTTGACACATATCATGTGA 2424 0.4319 MATCLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLNIPGDNHLNDAMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISALGDEKKRKEGLHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVINRDPMSNEMLKMRQQLEYLQAELCARSGNSSEEVQVLKERITWLEAANEDLCRELHEYRSRCSVVEQCDKDSYDSSACIVKADGLKRSLPIIAHDYPMSETAGESREIEEVTKEWEHTLLQNSMDRELHELNKRLEQKESEMKLFGVSDTERERDHLLAEVENLAANSDGQTQKLEDIHAQKLKELEAQILELKKKQESQVQLTKQKQKSDEAAKKLQDEIQAIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKMVLQRKTEEAAMATKRLKELLEARKASSRDTSVTMNGSGTNSQSNEKSLQRWLDHELEVMVKEHEVRFEYEKQSEVRAALAEELAMLKQVNEFAAKGLSPPKGKNGFARASSMSPNARMARIASLESMLSISSNSLVAMASQLSEAEERERAFTNRGRWNQLRSMGEAKNLLQYMFNSVADARCQLWERDMEIREMKDQIKELVGLLRQSEMKRKETEKELKMREQAVATTLATPASGNTPNSLKHYAEDMKDPLSPMSVPVPKQLKFTPGVVNGSVRESTAIDQSRRMVPIGHLSMKKLAIAGQASGKLWRWKRSHHQWLLQFKWKWQKPWRLSEWIRHSDETIMRSKPRSQALTHIM 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90946g00001 807 Coils Coil 451 471 - -
Stsc90946g00001 807 MobiDBLite consensus disorder prediction 475 496 - -
Stsc90946g00001 807 Coils Coil 291 311 - -
Stsc90946g00001 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 195 IPR027417 -
Stsc90946g00001 807 SMART kinesin_4 1 172 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc90946g00001 807 Pfam Kinesin motor domain 3 164 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc90946g00001 807 MobiDBLite consensus disorder prediction 1 24 - -
Stsc90946g00001 807 ProSitePatterns Kinesin motor domain signature. 59 70 IPR019821 GO:0003777|GO:0005524|GO:0007018
Stsc90946g00001 807 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 1 800 IPR027640 GO:0003777|GO:0007018
Stsc90946g00001 807 Coils Coil 641 675 - -
Stsc90946g00001 807 Coils Coil 346 411 - -
Stsc90946g00001 807 MobiDBLite consensus disorder prediction 471 496 - -
Stsc90946g00001 807 Gene3D Kinesin motor domain 1 188 IPR036961 -
Stsc90946g00001 807 Coils Coil 317 337 - -
Stsc90946g00001 807 PRINTS Kinesin heavy chain signature 17 34 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc90946g00001 807 PRINTS Kinesin heavy chain signature 60 78 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc90946g00001 807 PRINTS Kinesin heavy chain signature 114 135 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc90946g00001 807 ProSiteProfiles Kinesin motor domain profile. 1 164 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90946g00001 Stsc-Chr90946 4110 11501 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90946g00001 5 188 Calmodulin-binding Proteins AT5G65930 42.935 3.10e-35 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90946g00001 - - gmx:100786770 1405.96