Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90945g00009 ATGAAGGGGAGCTTGAAGATGACGAGCTTGTTGTCTCATATCAGAAATTCCTCTAAGAAAACCAAAATTAACACTAACAGACACAGTAACAGAAAGAGAAGCAAGCTTAGAAACCATAACGCCATTTCCATTCCCAAAGACTTGCCTTTTCCTCAACAACAACAAGATGATGATGAAAAAGAGAATGCTGAGGAAGGTTTCAAGCTCAAAAGCTCTGCCCCATCACACACACATGGTGTTCAGCCCTTGGGGAACCTCTACCTCAACCCAGGGTTCTTGGATAGTTCTGATTTGGGGGTTTTGTCCACTGTGAGCAAGTCCTTTTATGTTTTCACAAACCACGAACCTCTTTGGAGGAACCTTGTGTTGGAGAATCTCAACGGTGGGTTTCAGTTCAATGGGTCTTGGAAATCAACTTATGTTGCTGCTTCCTACCCTTCATTTGATATATCAAGTAGTGCACTTAAAAGCTTTAAAGTTAGAGACTTTTATTCTGATTATCTCTTTCAGAGTTGGCTCTGTGCTAATCTTGAAATGAAACCTGAGTGGTTGGAGAGGGATAATATAGTCAGGAAGAGGGGCATTTCAGTTGAAGAGTTTGTGTTGAACTTCGAGGAGCCTAATAAGCCGGTGTTGTTGGAAGGATCTATTGATAATTGGGATGCACTGAGGAATTGGGATAGAGATTATTTGATGCAGTTGTCCGGTGATGTTAAGTTTGCAGTTGGACCAGTTGAAATGAAGCTTGGAGACTATTTTCGCTACTCAGATCAGGTTAGAGAAGAAAGGCCATTGTATTTGTTTGATCCGAAATTCGCTGAAAAGGTTCGGAAATTAGGTTCTGAATATGAAGTTCCGGTGTATTTTCGAGAGGATTTGTTTGGTGTTTTAGGCAGTGAGAGACCTGACTACAGGTGGATCATTATTGGTCCTGCCGGTTCCGGATCATCTTTTCATGTTGATCCGAATTCAACTTCAGCTTGGAATGCAGTGATCAAGGGATCAAAGAAATGGATACTATTTCCTCCTGATGTGATCCCGCCAGGAGTTCATCCTAGTCCTGATGGTTCAGAGGTTGCATCTCCGGTTTCGATAATGGAGTGGTTCATGAACTTCTACAGTGCAACAAAGAACTGGAAAAAGAAACCTGTTGAGTGTGTATGCAAAGCTGGGGAGGTTATCTTCGTACCTAATGGATGGTGGCATTTGGTGATCAACCTGGAGGAGTCCATAGCCATAACCCAAAATTATGTTAGTAGGAGAAATTTGTTAAATGTGCTAGATTTTCTAAATAGGCCAAATGCTAGCACACTGGTGTCTGGAACAAGGGATCGTGTGAATTTGTATGATAAGTTTAAGAATGCTATTGAGGCTTCTTTTCCTGGAGAAATTGTTGAACTGACCAGAAAAGAAGCAGAGAAAAAGATCCAGCAGAAGAAGCTCTCATTCTGGGATTCTGTCACAGATTCCAATGCTGGAGCTTTCAAGTTCTCTTTCTAG 1500 0.4167 MKGSLKMTSLLSHIRNSSKKTKINTNRHSNRKRSKLRNHNAISIPKDLPFPQQQQDDDEKENAEEGFKLKSSAPSHTHGVQPLGNLYLNPGFLDSSDLGVLSTVSKSFYVFTNHEPLWRNLVLENLNGGFQFNGSWKSTYVAASYPSFDISSSALKSFKVRDFYSDYLFQSWLCANLEMKPEWLERDNIVRKRGISVEEFVLNFEEPNKPVLLEGSIDNWDALRNWDRDYLMQLSGDVKFAVGPVEMKLGDYFRYSDQVREERPLYLFDPKFAEKVRKLGSEYEVPVYFREDLFGVLGSERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGSEVASPVSIMEWFMNFYSATKNWKKKPVECVCKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLNRPNASTLVSGTRDRVNLYDKFKNAIEASFPGEIVELTRKEAEKKIQQKKLSFWDSVTDSNAGAFKFSF 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90945g00009 499 FunFam F-box protein At1g78280 169 419 - -
Stsc90945g00009 499 SUPERFAMILY Clavaminate synthase-like 191 432 - -
Stsc90945g00009 499 SUPERFAMILY F-box domain 92 141 IPR036047 GO:0005515
Stsc90945g00009 499 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 83 497 - -
Stsc90945g00009 499 MobiDBLite consensus disorder prediction 13 77 - -
Stsc90945g00009 499 MobiDBLite consensus disorder prediction 52 67 - -
Stsc90945g00009 499 MobiDBLite consensus disorder prediction 20 39 - -
Stsc90945g00009 499 Gene3D Cupin 157 419 - -
Stsc90945g00009 499 SMART cupin_9 268 434 IPR003347 -
Stsc90945g00009 499 Pfam Cupin-like domain 199 417 IPR041667 -
Stsc90945g00009 499 ProSiteProfiles JmjC domain profile. 274 434 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90945g00009 Stsc-Chr90945 46307 48368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90945g00009 92 423 Glycosyltransferase AT1G78280 38.123 4.87e-72 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc90945g00009 Cupin_8 1.1e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90945g00009 - - lja:Lj1g3v4753250.1 832.017