Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90937g00009 ATGATTAGAAATCTTGCTCTTTCCTCTGTCCTATTCAATGGGGTAGCTAAAGATAACATTCAGAAAAGTTTAGGAATTGAAAGTGTAAATGATAGTTGCTCCTCTTCAAAATCAAATATGGAACTTGATTCAGATTCGGTAGAAACTGAAATTGATGAACCTTGTGAATGCTCCTCATCCAGTGCGATAGTTATGGATGTTACAAGGGAAGAAAAGACAGAAAAGGATTTCTGCATCAATATTCTAAGAAGCTATGGACTCATTCGAGGAGATTCTTTTGCAAATAATGTTGCTTGTTTGGAAAATGTTGTCACCGCTGGTAATATCTGCTGTTCCAGGTCATGCAAAACATGTGTTAAGTTGGACAGTTCATTGAACATGCTTTTATGTGATCACTGCGAAGATGCATATCATCCAACTTGCTACAACCCACGTTTGAAAAAATTACCAATCGATGAATGGTTTTGTCATTCATGTCTTAAAAAAAGGCAGAAAGTTCTCAAAGAGACAATCATCAAATCACCAGGTATCCACAATGAACTGGGCAAATGTAGAACTGCCTCAGGTAAGGTAGAATTGAATCCAATAATGTTGATGTTGAGAGACACAGAGCCATATACAACCAATGTGCGGGTTGGTAAAGGTTTTCAAGCTGAAGTACTTGGTTGGTTTGGTCCTCAAGGAAGTGATGAAGATGAACTTCCTGAATTGTTTGAAATAAATCATGCGGAGTTTCCAAGACTGCAGGAAGAGAATAGAAGAAATCCAACTAGACTCAGCTCCATAGGTAATTGGCTTCAGTGTCAGGAGATTATAAATAGAGCCAATGGAACCGTGTGTGGAAAATGGCGTAGAGCTCCACTTTTTGAAGTTCAAACTGATGACTGGGAGTGCTTCTGTGCTATCCATTGGGATCCATATCACGCTGATTGTGCTGTACCTCAGGAGCTCGAAACAGATCAAGTTCTAAAGCACCTTAAGTATATAGAAATGCTAAGGCCTCGACTCGCTGCCAAACAGAGAAAATCAGATTGCAATAATAGTGCCAATTGA 1053 0.3913 MIRNLALSSVLFNGVAKDNIQKSLGIESVNDSCSSSKSNMELDSDSVETEIDEPCECSSSSAIVMDVTREEKTEKDFCINILRSYGLIRGDSFANNVACLENVVTAGNICCSRSCKTCVKLDSSLNMLLCDHCEDAYHPTCYNPRLKKLPIDEWFCHSCLKKRQKVLKETIIKSPGIHNELGKCRTASGKVELNPIMLMLRDTEPYTTNVRVGKGFQAEVLGWFGPQGSDEDELPELFEINHAEFPRLQEENRRNPTRLSSIGNWLQCQEIINRANGTVCGKWRRAPLFEVQTDDWECFCAIHWDPYHADCAVPQELETDQVLKHLKYIEMLRPRLAAKQRKSDCNNSAN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90937g00009 350 ProSitePatterns Zinc finger PHD-type signature. 115 159 IPR019786 -
Stsc90937g00009 350 Pfam PHD-finger 115 161 IPR019787 -
Stsc90937g00009 350 SMART PHD_3 114 160 IPR001965 -
Stsc90937g00009 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 179 IPR013083 -
Stsc90937g00009 350 Gene3D - 263 328 - -
Stsc90937g00009 350 FunFam RING/FYVE/PHD zinc finger superfamily protein 104 180 - -
Stsc90937g00009 350 ProSiteProfiles Zinc finger PHD-type profile. 112 162 IPR019787 -
Stsc90937g00009 350 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 108 171 IPR047171 GO:0006338
Stsc90937g00009 350 SUPERFAMILY FYVE/PHD zinc finger 113 166 IPR011011 -
Stsc90937g00009 350 ProSiteProfiles Zinc finger CW-type profile. 259 319 IPR011124 GO:0008270
Stsc90937g00009 350 FunFam uncharacterized protein LOC106759733 isoform X4 263 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90937g00009 Stsc-Chr90937 30138 36924 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90937g00009 115 160 C2H2 Transcription Factor Family AT3G01460 41.304 8.15e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc90937g00009 PHD 4.1e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90937g00009 - - gmx:100800660 531.561