Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90937g00008 ATGATTAGAAATCTTGCTCTTTCCTCTGTCCTATTCAATGGGGTAGCTAAAGATAACATTCAGAAAAGTTTAGGAATTGAAAGTGTAAATGATAGTTGCTCCTCTTCAAAATCAAATATGGAACTTGATTCAGATTCGGTAGAAACTGAAATTGATGAACCTTGTGAATGCTCCTCATCCAGTGCGATAGTTATGGATGTTACAAGGGAAGAAAAGACAGAAAAGGATTTCTGCATCAATATTCTAAGAAGCTATGGACTCATTCGAGGAGATTCTTTTGCAAATAATGTTGCTTGTTTGGAAAATGTTGTCACCGCTGGTAATATCTGCTGTTCCAGGTCATGCAAAACATGTGTTAAGTTGGACAGTTCATTGAACATGCTTTTATGTGATCACTGCGAAGATGCATATCATCCAACTTGCTACAACCCACGTTTGAAAAAATTACCAATCGATGAATGGTTTTGTCATTCATGTCTTAAAAAAAGGCAGAAAGTTCTCAAAGAGACAATCATCAAATCACCAGGTATCCACAATGAACTGGGCAAATGTAGAACTGCCTCAGGTAAGGTAGAATTGAATCCAATAATGTTGATGTTGAGAGACACAGAGCCATATACAACCAATGTGCGGGTTGGTAAAGGTTTTCAAGCTGAAGTACTTGGTTGGTTTGGTCCTCAAGGAAGTGATGAAGATGAACTTCCTGAATTGTTTGAAATAAATCATGCGGAGTTTCCAAGACTGCAGGAAGAGAATAGAAGAAATCCAACTAGACTCAGCTCCATAGGTAATTGGCTTCAGTGTCAGGAGATTATAAATAGAGCCAATGGAACCGTGTGTGGAAAATGGCGTAGAGCTCCACTTTTTGAAGTTCAAACTGATGACTGGGAGTGCTTCTGTGCTATCCATTGGGATCCATATCACGCTGATTGTGCTGTACCTCAGGAGCTCGAAACAGATCAAGTTCTAAAGCACCTTAAGTATATAGAAATGGATAATGGAGAGATCGATGAGGATGTAAACCATAGGATTCAAGCAGGTTGGTTAAAATGGCGAAATGCATCGGGTTTTATATGCGACAAAAAAGTGCCTTTAAAACTTAAAAGGTAA 1110 0.3865 MIRNLALSSVLFNGVAKDNIQKSLGIESVNDSCSSSKSNMELDSDSVETEIDEPCECSSSSAIVMDVTREEKTEKDFCINILRSYGLIRGDSFANNVACLENVVTAGNICCSRSCKTCVKLDSSLNMLLCDHCEDAYHPTCYNPRLKKLPIDEWFCHSCLKKRQKVLKETIIKSPGIHNELGKCRTASGKVELNPIMLMLRDTEPYTTNVRVGKGFQAEVLGWFGPQGSDEDELPELFEINHAEFPRLQEENRRNPTRLSSIGNWLQCQEIINRANGTVCGKWRRAPLFEVQTDDWECFCAIHWDPYHADCAVPQELETDQVLKHLKYIEMDNGEIDEDVNHRIQAGWLKWRNASGFICDKKVPLKLKR 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90937g00008 369 ProSitePatterns Zinc finger PHD-type signature. 115 159 IPR019786 -
Stsc90937g00008 369 SMART PHD_3 114 160 IPR001965 -
Stsc90937g00008 369 FunFam uncharacterized protein LOC106759733 isoform X4 263 328 - -
Stsc90937g00008 369 FunFam RING/FYVE/PHD zinc finger superfamily protein 104 180 - -
Stsc90937g00008 369 PANTHER REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN 323 368 - -
Stsc90937g00008 369 Gene3D - 263 328 - -
Stsc90937g00008 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 179 IPR013083 -
Stsc90937g00008 369 SUPERFAMILY FYVE/PHD zinc finger 113 166 IPR011011 -
Stsc90937g00008 369 ProSiteProfiles Zinc finger PHD-type profile. 112 162 IPR019787 -
Stsc90937g00008 369 Pfam PHD-finger 115 161 IPR019787 -
Stsc90937g00008 369 ProSiteProfiles Zinc finger CW-type profile. 259 319 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90937g00008 Stsc-Chr90937 29193 36924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90937g00008 115 160 C2H2 Transcription Factor Family AT3G01460 41.304 9.03e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc90937g00008 PHD 4.5e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90937g00008 - - gmx:100800660 505.368