Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90935g00003 ATGGCCGCCGACGGTGTCGTTTCCTTCCTGATTCAGAACTTGTCACAGCTTCTTGTTGATGAAGCGAATCTGCTGTCCGGTGTGGAGGGAAAAGTCAAGTCCCTCATCAGCGAGCTCAAGTTCATAGACATCTTCCTCAAGAGCTCTGAGGGAAAGCGCAGCAACAACATCGTGAAGGAAGTTGTGAACCAGATCAGAGATGTTGCCTATGAAGCTGAAGATGTTGTTGACAGCTACGTCGCCAATGTTAGCCTCCACAGAAGCAGAACCATGCTGGGGAAGATGTTCCATTGTGTTGGCCAAGCTATGATGCTTCATGATGTGGATGCTGAGATTGAGAAGATCAAGAGATCCATTTGTGAGATATACAGCAACAGGGACAAGTACGGCATTGGAGAAGGCGAGTTCCAGCGTGGTGGAGAAGCTACTACGGCCGCCGCCGCGGAGGTGCTCCGGAAGAGGAGGAGGGATGTGGAGGAGGAAGATGTGGTTGGGTTGGTTCATGAGTCTGATGCTGTCATTAAGCAGCTCGTGAAGAGTGATTCGCGGCTTCAAACAGCATCCATAATTGGAATGGGTGGTTTGGGAAAGACTACTCTTGCTAGAAAGATCTATAATAGTAAGAAGCTGAAGGAAATGTATCCATTTCGTGCATGGGGTTATGTGTCTAATGAGTACAGAGCTAAAGAGTTATTGCTGAGCCTTCTTCGGTGTTTGTCGACATCGAAATCCAGTGATGAAAGCGAAGAGGAACTGAAAGAGCATCTGAGAGAGTGCTTGAATGGTAGGAAGTACTTAATTGTGCTTGATGACATCTGGAAAACAGAAGTGTGGGATGATGTAAAAGGAGCTTTTCCAGATGATAACAATGGCAGCAGAATATTGATAACTAGTAGAATTGGGGAGGTAGCTGCTTATATGGGAACAATGCCTCCACACTACCTTCCATTTCTCACTCAAGAACAAAGCTGGGAACTCTTCTCCAAGAAAGTGTTTAGAGGAGAAGATTATTGCCCACCTGATCTAAAAGATATAGGAATGTCAATTGTTGAAAGCTGTAGTGGCTTACCTCTTGCTATTGTGGTGCTAGCTGGGCATGTTTCCAAGAAGGACAAGTCTCTGAGAGAGTGGTCTAGAATCAAAGATCATGTCAATTATCTTCTTGTTCATGAGAACAACACCAAGGTGATGGATATACTAAAACTTAGCTATGACAGTTTGCCTCAGAAATTGAAGTCATGCTTTCTGTATTTTGCAGTCTATCCTGAAGATTATGAGATCCCTGCAAGAAATTTGATCCAGTTATGGGTGGCTGAAGGTTTTATACAAATTCCAGAAACTGGAACATCAGACACACTATCACTTGAAGATATTGCAGAATACAACTTGGAAGAGTTGGTTGATCGGAGTCTGGTGCAAGTGGCAAGCAAGAGGAGCAGTGGGGGTGTGAAAACATGTCGCATCCACGATCTTCTTCGCGATCTTTGCATATCTGAAAGCCAAGCAACTAAATTCATAGAGATACATAAAGAATTGGACATTAGCAAATGCAACTCTCGTAAGATGTCTTTCCACCACAGCACACAATTCTCATTCACACCAAACAAAAACAACCAGCTACACATGCATTCTTTGTTCCTCTTTGGCGAAGAGCTTTCCTGGGATGATGAATCAAAAGGATGTAAACAGTTTAGGAAAAGCTTCAAGTTGGCCCGTGTGCTACACCTCAACAAAGTGTTGTTGGATTTGCCACCCAGTGGCTTGAAGCTGATGATCCATCTAAGGTACCTGAAGATAAAAACGGATTCTAGATCTGCTGAAAATATTTTAACTTCTATATCCAATCTTAGGAATCTAGAAACATTACATTTAAGTTGTGACTGGGTGTTCTCCATCCCAATCAAGATATGGAAGTTGAAGCGGTTGAGGCATTTCAATGTGAGAATCAAAGAGATTTTGAACATGTCTAGAGTAACAAACTGCGAAAGAATGTCCAACCTCCAAACTCTATGTGAAGTGCCTCTCTATTCAGAAACCATATCAATGCTTAACAATGATAACTTTCCAAACTTAAAGAAGCTGGGTTTGTGGTGCTATCCATACTTCAAGGATGGCTTACAACACAAGCAATCTTCGACAGGCCGCGCTGCCAATCTTTCATTGCTTAGCATGCACCACCTTAGCAAACTCTGTACACTCAAAATAAGAGGTGATATCTTCCATCCATTTTGTGCAAATGGATTTAACCCAACATCTTTTTCATCAAACCTTGAAAAGATTACCATGGTAGACTTCAAGGAATTGGACTTTAAAGCTCTAGGGAAACTCCCCAACCTCAGGATATTGAAACTGAGAAGAGGATCAACAGGGGATGGTCTTCATTGTGTGGCCGGAGAGTTCCCGGCGCTTCAAATGCTTCAGATGAAGGAAGTGCAGGTTGAAAGGTGGATACAAGAAGAAGGTGCAATGCCTTGTCTTAGTCGTTTGATCATCAAAGGTGGTTCAGTGGAAGACCTTCCTCTACAACTTCGCTCCTTGGCTTCCATTAAATAA 2553 0.4309 MAADGVVSFLIQNLSQLLVDEANLLSGVEGKVKSLISELKFIDIFLKSSEGKRSNNIVKEVVNQIRDVAYEAEDVVDSYVANVSLHRSRTMLGKMFHCVGQAMMLHDVDAEIEKIKRSICEIYSNRDKYGIGEGEFQRGGEATTAAAAEVLRKRRRDVEEEDVVGLVHESDAVIKQLVKSDSRLQTASIIGMGGLGKTTLARKIYNSKKLKEMYPFRAWGYVSNEYRAKELLLSLLRCLSTSKSSDESEEELKEHLRECLNGRKYLIVLDDIWKTEVWDDVKGAFPDDNNGSRILITSRIGEVAAYMGTMPPHYLPFLTQEQSWELFSKKVFRGEDYCPPDLKDIGMSIVESCSGLPLAIVVLAGHVSKKDKSLREWSRIKDHVNYLLVHENNTKVMDILKLSYDSLPQKLKSCFLYFAVYPEDYEIPARNLIQLWVAEGFIQIPETGTSDTLSLEDIAEYNLEELVDRSLVQVASKRSSGGVKTCRIHDLLRDLCISESQATKFIEIHKELDISKCNSRKMSFHHSTQFSFTPNKNNQLHMHSLFLFGEELSWDDESKGCKQFRKSFKLARVLHLNKVLLDLPPSGLKLMIHLRYLKIKTDSRSAENILTSISNLRNLETLHLSCDWVFSIPIKIWKLKRLRHFNVRIKEILNMSRVTNCERMSNLQTLCEVPLYSETISMLNNDNFPNLKKLGLWCYPYFKDGLQHKQSSTGRAANLSLLSMHHLSKLCTLKIRGDIFHPFCANGFNPTSFSSNLEKITMVDFKELDFKALGKLPNLRILKLRRGSTGDGLHCVAGEFPALQMLQMKEVQVERWIQEEGAMPCLSRLIIKGGSVEDLPLQLRSLASIK 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90935g00003 850 SUPERFAMILY L domain-like 488 848 - -
Stsc90935g00003 850 Gene3D - 409 498 IPR036388 -
Stsc90935g00003 850 Pfam Rx N-terminal domain 6 89 IPR041118 -
Stsc90935g00003 850 Gene3D - 317 408 IPR042197 -
Stsc90935g00003 850 PRINTS Disease resistance protein signature 259 273 - -
Stsc90935g00003 850 PRINTS Disease resistance protein signature 614 630 - -
Stsc90935g00003 850 PRINTS Disease resistance protein signature 353 367 - -
Stsc90935g00003 850 PRINTS Disease resistance protein signature 186 201 - -
Stsc90935g00003 850 Pfam NB-ARC domain 170 405 IPR002182 GO:0043531
Stsc90935g00003 850 PANTHER DISEASE RESISTANCE PROTEIN RP 46 808 IPR044974 GO:0006952
Stsc90935g00003 850 Gene3D - 6 123 - -
Stsc90935g00003 850 FunFam Probable disease resistance protein At1g63360 404 498 - -
Stsc90935g00003 850 Gene3D Ribonuclease Inhibitor 536 850 IPR032675 -
Stsc90935g00003 850 CDD RX-CC_like 3 122 IPR038005 -
Stsc90935g00003 850 Gene3D - 141 311 IPR027417 -
Stsc90935g00003 850 FunFam Probable disease resistance protein At1g61300 145 312 - -
Stsc90935g00003 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 418 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90935g00003 Stsc-Chr90935 13029 15828 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90935g00003 164 495 WRKY Transcription Factor Family AT5G45050 23.214 4.12e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90935g00003 - - adu:107486455 1439.86