Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90933g00010 ATGGCAGTAGTGCATGCATTTGGCACCCTGTTGCTTGTTCTTTCCTGTGTGTTGAGGTTTGTATTTGTATCCTCTGATATCAACTTTGTACAAAATGGATTTCTAGCAGCAGGCTTGAACCTTGATGGATCTTCTTATTTGAGGCCTAATGGTATACTTACCTTGACCAATGATTCCTCAAAGATCCTTGGTCATGCATTCTATCCATCACCTTTGCCATTCAAATCTAGCAGAAACAAATCCTTTATTGCATCCTTTAGCACTTCCTTTGTGTTCTCCATCATTCCCAAATACCCTGAACTTGGTGGGCATGGTCTTGCTTTCGTCCTAATATCGACCAAAGAACCGAAAGGTTGCCTTGTAAACCAATATTTAGGCCTCCCAAATGAGACAAGTAATCAAGAATTCTCAACCAAGTTCCTAGCTATAGAGTTTGATGCGGTACAAAACCTTGAACTAGAGGACATTGATGACAATCATGTGGGAATCGATATCTCCAGCCTCATCTCTAAGGTATCTAAGTCAGCAGCATACTATGGAAATGGCCAAGATCTCAACAAGAACATTCCAATCGATCTCAAGAGTGGAGACCCCGTTCAAGCATGGGTTGATTACAATGAAGAGAAGAAGTTGATGAATGTTACAGTTTCTCCTTTTGGCATGCCAAAGCCATATTTTCCTCTGATATCTTTTCCTATGGACCTATCTTTGGTGTTTAATGACTACATGTATGCAGGCTTTTCTGCATCCAATGGTTTGTTGATAGCTGAGCATAATATACATGGCTGGAGCTTCAGCATTGGAGGAAAAACCAAAGAGCTAGATAAATCAACTCTTCCGCTCATTCGTTCTAGTACAAATAATGTGGTGCATAGAAAAGATATGGCATTAGGCATCACTCTGGCGACTCTTTTTGTCTTAATAATTGTAGCAGCTACTATCATCCTGCGCAGATTAAGAAATAAGGATGATATCTTAGAAGACTGGGAACTCGAATATGGAGCTCATAGATTTGGATATTCTGAGCTCTATTCAGCTACAAGAAGGTTTGGTGAGAGAAACTTTATTGGGTGTGGAGGCTTTGGGAAAGTATACAGAGGAGTACTACCAACAGGACTTGAAGTAGCTGTGAAGCGAATCGCTCCTAATTCAAGGCAGGGAATGAGAGAATTTGTTGCAGAAATAACAAGCATGGGGAACCTAAGGCATAGAAATCTGGTGCAGTTACATGGGTGGTGCAGGAAGCAGGATGAACTACTACTTGTTTATGACTATGTCCCAAATGGAAGCCTAGACACGCTTTTGTTTGAGAATGATCATCAAAAGAAGACATTACTAACTTGGGACCAGAGATTCAAGATCGTTACCGGTGTTGCACAAGGGCTGCTCTACCTCCATGAAGAATGTGCACTGCAGGTGGTTCACAGAGATGTAAAGCCAAGCAATGTCTTGATAGATGCAGATCTGCAACCTAAGCTTGGTGATTTTGGCTTAGCAAGGTGTCAGGAGCACGGAATCAATCCAAAGACGACACATGTAGTAGGAACACTAGGATACATTGCACCTGAACTCTCCAAGACCGGAAAAGCTACAACAAGCACGGATGTGTATGGGTATGGTGTACTCATTTTGGAAGTAGCTTGTGGAAGAAGGCCAATAGAGCCCCTGAAAACTCCAGGGGAGCTGGTATTAGTGGACTGGGTGAGTGAACTGCATTGCCAAGGGGAGATTGGCAGAGCAATTGACCCGAGTTTAGATGAGTATGACAAAGATGAAGCTGAGCTTGTGCTTAGGATTGGATTGCTTTGTTGTCATCCCATGCCTGATTGTAGGCCTAATATGAGAAGGATTGTCCAGTTCCTTCTTAAAGAAGCCACCCTTCCTTCACTTCTTCCCGAAATTTCTCGTACCGGCGACCCTCCAAGAGCAATAATGGAATATAAGCAAAATTTTCGAGATGATTCTAACCCTTCAAGCTCTGGAGCGTTCTCATCAAATTATTTTAGTCACACAAGCTTTGATAAGTGA 2028 0.4226 MAVVHAFGTLLLVLSCVLRFVFVSSDINFVQNGFLAAGLNLDGSSYLRPNGILTLTNDSSKILGHAFYPSPLPFKSSRNKSFIASFSTSFVFSIIPKYPELGGHGLAFVLISTKEPKGCLVNQYLGLPNETSNQEFSTKFLAIEFDAVQNLELEDIDDNHVGIDISSLISKVSKSAAYYGNGQDLNKNIPIDLKSGDPVQAWVDYNEEKKLMNVTVSPFGMPKPYFPLISFPMDLSLVFNDYMYAGFSASNGLLIAEHNIHGWSFSIGGKTKELDKSTLPLIRSSTNNVVHRKDMALGITLATLFVLIIVAATIILRRLRNKDDILEDWELEYGAHRFGYSELYSATRRFGERNFIGCGGFGKVYRGVLPTGLEVAVKRIAPNSRQGMREFVAEITSMGNLRHRNLVQLHGWCRKQDELLLVYDYVPNGSLDTLLFENDHQKKTLLTWDQRFKIVTGVAQGLLYLHEECALQVVHRDVKPSNVLIDADLQPKLGDFGLARCQEHGINPKTTHVVGTLGYIAPELSKTGKATTSTDVYGYGVLILEVACGRRPIEPLKTPGELVLVDWVSELHCQGEIGRAIDPSLDEYDKDEAELVLRIGLLCCHPMPDCRPNMRRIVQFLLKEATLPSLLPEISRTGDPPRAIMEYKQNFRDDSNPSSSGAFSSNYFSHTSFDK 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90933g00010 675 CDD lectin_legume_LecRK_Arcelin_ConA 27 269 IPR001220 GO:0030246
Stsc90933g00010 675 Gene3D Transferase(Phosphotransferase) domain 1 426 627 - -
Stsc90933g00010 675 ProSiteProfiles Protein kinase domain profile. 350 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90933g00010 675 FunFam L-type lectin-domain containing receptor kinase S.4 426 634 - -
Stsc90933g00010 675 CDD STKc_IRAK 356 623 - -
Stsc90933g00010 675 SMART serkin_6 350 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90933g00010 675 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 270 IPR013320 -
Stsc90933g00010 675 Gene3D - 25 289 - -
Stsc90933g00010 675 SUPERFAMILY Protein kinase-like (PK-like) 326 621 IPR011009 -
Stsc90933g00010 675 PANTHER - 42 628 - -
Stsc90933g00010 675 FunFam L-type lectin-domain containing receptor kinase S.4 25 273 - -
Stsc90933g00010 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Stsc90933g00010 675 Pfam Protein kinase domain 354 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90933g00010 675 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Stsc90933g00010 675 Pfam Legume lectin domain 27 279 IPR001220 GO:0030246
Stsc90933g00010 675 Gene3D Phosphorylase Kinase; domain 1 312 425 - -
Stsc90933g00010 675 FunFam receptor-like protein kinase FERONIA 318 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90933g00010 Stsc-Chr90933 46495 48522 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90933g00010 26 632 Receptor kinase-like Gene Family AT3G55550 47.883 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc90933g00010 Pkinase 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90933g00010 - - ahf:112792279 1210.67