Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90933g00009 ATGGGGGATAGCAACATCAACCTTCCACCGGGGTTTCGGTTTTATCCCACTGATGAAGAGCTTGTAGTCCATTTCCTTCACAGAAAGGCAGCACTTCTACCTTGCCACCCTGATGTCATTCCTGATCTTGATCTCTACCCTTTTGATCCATGGGAACTTGATGGTAGAGCTTTGGCAGAGGGGAACCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTCACTGGCAATGGTTATTGGAATCCAATGGGAATGGAAGAGCCAGTGGTTTCAAACTCAAGCAACAGGAGAGTTGGTATCAAGAAGTTTTATGTGTTCTATGTTGGAGAAGCCCCTGATGGTAACAGAACCAATTGGATCATGCAAGAATATCGTCTATCAGATTCTGCAGCATCCTCTAGCAGATCATCAACCAAAAGAAAATCACAACCAAAAACAGATCATAGTAAATGGGTGATATGTCGAGTTTATGAAAGTGATGAAAATGATGATGATGATGGTAATGGTGATGGAACAGAACTTTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGATGAAGTTAGCTTGCCAAATTAG 588 0.4184 MGDSNINLPPGFRFYPTDEELVVHFLHRKAALLPCHPDVIPDLDLYPFDPWELDGRALAEGNQWYYYSRRTQNRVTGNGYWNPMGMEEPVVSNSSNRRVGIKKFYVFYVGEAPDGNRTNWIMQEYRLSDSAASSSRSSTKRKSQPKTDHSKWVICRVYESDENDDDDGNGDGTELSCLDEVFLSLDDLDEVSLPN 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90933g00009 195 Gene3D NAC domain 17 165 IPR036093 GO:0003677|GO:0006355
Stsc90933g00009 195 FunFam NAC domain-containing protein 104 17 163 - -
Stsc90933g00009 195 SUPERFAMILY NAC domain 6 159 IPR036093 GO:0003677|GO:0006355
Stsc90933g00009 195 PANTHER NAC TRANSCRIPTION FACTOR 56 8 166 - -
Stsc90933g00009 195 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Stsc90933g00009 195 ProSiteProfiles NAC domain profile. 8 160 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90933g00009 Stsc-Chr90933 37195 38563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90933g00009 1 163 NAC Transcription Factor Family AT1G61110 43.333 9.42e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc90933g00009 NAM 2.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90933g00009 - - gmx:100788893 330.872