Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90933g00003 ATGTCTGACGTGGAAGAATTTCGCTGCTTCATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGTTAAAGGATACATTTGAAAAGTTTGGAAAGCTTGTTGAAGCAAAGGTGGTTGTAGACAAATTCTCTGGGCGCTCTCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGCATGGATTTAGATGGGCGAACTATCACTGTTGATAAAGCTCAGCCTCAGCAAGGATCGGGTAGAGATGATGGTGACCGCCACCGTGAGCGTGGTCGAGATCGTGACCGTGATCGTGGTCGCGATCGTGACAGAGATTATGGAGGTGGTCGAGGATCTAATGGTGGTGAATGCTTTAAATGTGGTAAACCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGCGGAAGAGGAGGAAGGTATGGTGGCAGGGAAGGTGGTAGATATGGTGGAAGCAGTGGTTATGGTCCTGACAGAAATGCAGATCGTTCTTCCGGTGGACGTAGCAGGGATGGTGGCAGGGATGGAGATTCAGGAAACGATCGATACTATCGTGATCGTTCTGGACCATATGAACGACGGGGATTGGGAGGTGCTCGTTAA 630 0.4778 MSDVEEFRCFIGGLAWSTSDRKLKDTFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDAMNGMDLDGRTITVDKAQPQQGSGRDDGDRHRERGRDRDRDRGRDRDRDYGGGRGSNGGECFKCGKPGHFARECPSEGGRGGRYGGREGGRYGGSSGYGPDRNADRSSGGRSRDGGRDGDSGNDRYYRDRSGPYERRGLGGAR 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90933g00003 209 MobiDBLite consensus disorder prediction 172 202 - -
Stsc90933g00003 209 CDD RRM2_NsCP33_like 8 83 - -
Stsc90933g00003 209 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 204 - -
Stsc90933g00003 209 Pfam Zinc knuckle 126 142 IPR001878 GO:0003676|GO:0008270
Stsc90933g00003 209 SUPERFAMILY RNA-binding domain, RBD 4 116 IPR035979 GO:0003676
Stsc90933g00003 209 MobiDBLite consensus disorder prediction 76 209 - -
Stsc90933g00003 209 Gene3D - 2 103 IPR012677 -
Stsc90933g00003 209 FunFam Glycine-rich RNA-binding protein RZ1A 1 122 - -
Stsc90933g00003 209 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Stsc90933g00003 209 ProSiteProfiles Zinc finger CCHC-type profile. 127 142 IPR001878 GO:0003676|GO:0008270
Stsc90933g00003 209 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Stsc90933g00003 209 SMART rrm1_1 8 81 IPR000504 GO:0003723
Stsc90933g00003 209 SMART c2hcfinal6 126 142 IPR001878 GO:0003676|GO:0008270
Stsc90933g00003 209 Gene3D - 118 179 - -
Stsc90933g00003 209 SUPERFAMILY Retrovirus zinc finger-like domains 109 146 IPR036875 GO:0003676|GO:0008270
Stsc90933g00003 209 MobiDBLite consensus disorder prediction 88 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90933g00003 Stsc-Chr90933 7101 9177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90933g00003 10 93 Eukaryotic Initiation Factors Gene Family AT1G22760 35.714 2.16e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90933g00003 - - gmx:100815224 266.159