Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90932g00009 ATGCCCCCAACAGCAGCAGCAGTAGCTTTACACTCTTCTCTCTGCACCATCTCTTCTGAGAAACCATCAAGCAACAACCATAACCATGTTCTTCTCAAACCCAAGCTAAGTCTCGTCCATAACAACAACCACCACCACCACCCACTAATTCACCCAAAGCTCTCCCTACAATTCAAAGAGAAAATCCTCTGCCTTGAGATAATGGGCATTGATGCAGGGAAAGCACTGTCCCAGAACCCTAACCTCAGTACAGCAACCATGGAATCCATTCAGTCCATAATCTCCTTCCTTCAATCCAAAGGCATCCACCAAAAGGACTTGCAAAGAATATTTGGCATGTGCCCCAAGATCCTTACCTCTGACATCAAGAAAGATCTCAACCCAGTTTTTGATTTCCTCTTACAAGACCTCAGAGTCCCAGATCACAGCTTCAGGAGAATTGTCAACAAGAATCCAAGGTTGCTTACTGCAAGTGTTATGCAGCAGCTCAAACCAGCTCTCTTCTACCTCAAGAGGCTTGGCTTCAGGGATATGGCAGCCTTGGCTTTCCAAGATTCTGTTCTTTTGGTTTCTAATGTGGAGAAGACACTGATTCCTAAGCTCAAGTATTTGGAGAGTTTGGGGTTTTCAGAAGATGAGGCTAGAAGCATGGTTTTGAGGTGCCCAGCATTGTTTACTTTCAGCATTGAGAATAACTTTGAGCCTAAGTTTGAGTACTTTGATACCCAAATGGGGAGGGAATTGAAGGAGTTGAAAGAGTTTCCTCATTACTTTGGGTTTAGTTTGGAGAATAGAATAAAGCCTAGGCACATGGAAGTTGTAAAAGCTGGGGTCAATTTGCCATTGTCAGTTATGCTTAAAAGCACTGATGAAGAATTTAGGGAGCTAATTGGTGTAGATCAGAAGAATATGAGATGA 918 0.4325 MPPTAAAVALHSSLCTISSEKPSSNNHNHVLLKPKLSLVHNNNHHHHPLIHPKLSLQFKEKILCLEIMGIDAGKALSQNPNLSTATMESIQSIISFLQSKGIHQKDLQRIFGMCPKILTSDIKKDLNPVFDFLLQDLRVPDHSFRRIVNKNPRLLTASVMQQLKPALFYLKRLGFRDMAALAFQDSVLLVSNVEKTLIPKLKYLESLGFSEDEARSMVLRCPALFTFSIENNFEPKFEYFDTQMGRELKELKEFPHYFGFSLENRIKPRHMEVVKAGVNLPLSVMLKSTDEEFRELIGVDQKNMR 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90932g00009 305 Gene3D Transcription termination factor 3, mitochondrial 133 299 IPR038538 -
Stsc90932g00009 305 PANTHER CGI-12 PROTEIN-RELATED 208 295 IPR003690 GO:0003690|GO:0006355
Stsc90932g00009 305 FunFam Transcription termination factor MTEF1, chloroplastic 133 301 - -
Stsc90932g00009 305 SMART mt_12 145 176 IPR003690 GO:0003690|GO:0006355
Stsc90932g00009 305 SMART mt_12 108 140 IPR003690 GO:0003690|GO:0006355
Stsc90932g00009 305 SMART mt_12 179 210 IPR003690 GO:0003690|GO:0006355
Stsc90932g00009 305 SMART mt_12 73 103 IPR003690 GO:0003690|GO:0006355
Stsc90932g00009 305 SMART mt_12 215 247 IPR003690 GO:0003690|GO:0006355
Stsc90932g00009 305 SMART mt_12 248 279 IPR003690 GO:0003690|GO:0006355
Stsc90932g00009 305 Pfam mTERF 188 293 IPR003690 GO:0003690|GO:0006355
Stsc90932g00009 305 Pfam mTERF 76 176 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90932g00009 Stsc-Chr90932 27491 28570 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc90932g00009 mTERF 1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90932g00009 K15031 - gmx:100788221 429.098