Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90931g00007 ATGGGTGTTGACTATTACAAGATTTTGCAGGTTGATAAGAATGCAAAAGATGAAGACCTGAAGAAGGCTTATAGGAAACTTGCCATGAAGTGGCACCCTGATAAGAACCCCAACAACAAAAAAGATGCTGAAGCTAAGTTCAAGCAAATTTCTGAAGCCTACGAGGTTCTTAGTGATCCTCAGAAGAGAGCTATCTATGATCAGTATGGGGAGGAGGGGCTTAAGGGACAGGTACCCCCTCCTGATGCCGGTGGACCTGGGGCTGGGGCTGGGGCTGGTGGAGGAACTACATTCTTTTCGACCGGAGATTTCCCGGGAGGATCATTCCGGTTCAATCCCCGGAGTGCAGACGACATTTTCGCCGAATTCTTTGGATCTTCAAGCCCATTTGGTGGGAGAGGAGGCGGTGGCATGAGGTCGAGATTTTCTAGTGGGATGTTTGGAGATGATGATATGTTTGGATCCTTTGGGGAAGGAGGAAGGGTGCATGTTAGCCAAGGCGCGCCTCGCAAAGCGGCTACCATTGAGAACAAGTTGCCCTGCACCCTTGAGGAGATTTACAGAGGGACTACAAAGAAGATGAAGATCTCTAGAGAAATTGTGGATGCCAGTGGCAAAAGCATGCCAGTAGAAGAGATATTGACCATCAATGTCAAGCCTGGTTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAGGGAAACGAGCAGCTGAATGTGACCCCGGCAGACCTCGTCTTCGTCATCGAAGAAAAACCGCACAGCGTCTTCACTCGCGACGGAAACGACCTGATCGTGACGCAGAAGATCTCCCTTGCGGAAGCCTTGACCGGTTACACGGTGCGGCTCACCACACTAGATGACAGAACCTTAACCATACCAATCAACAATGTTATACATCCAAACTATGAGGAGGTTGTGCCTAGAGAAGGCATGCCATTGCCAAAGGATCCATCAAAGAAGGGGAACTTGAGAATAAGGTTCAACATTAAGTTCCCAACTAGGCTCACTGATGAACAGAAATCAGNNNNNNNNNNCCTGAGGGGAAAAAAATGA 1056 0.4848 MGVDYYKILQVDKNAKDEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYEVLSDPQKRAIYDQYGEEGLKGQVPPPDAGGPGAGAGAGGGTTFFSTGDFPGGSFRFNPRSADDIFAEFFGSSSPFGGRGGGGMRSRFSSGMFGDDDMFGSFGEGGRVHVSQGAPRKAATIENKLPCTLEEIYRGTTKKMKISREIVDASGKSMPVEEILTINVKPGWKKGTKITFPEKGNEQLNVTPADLVFVIEEKPHSVFTRDGNDLIVTQKISLAEALTGYTVRLTTLDDRTLTIPINNVIHPNYEEVVPREGMPLPKDPSKKGNLRIRFNIKFPTRLTDEQKSXXXXLRGKK 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90931g00007 351 FunFam DnaJ subfamily B member 13 3 134 - -
Stsc90931g00007 351 FunFam DnaJ subfamily B member 13 254 334 - -
Stsc90931g00007 351 Pfam DnaJ domain 4 67 IPR001623 -
Stsc90931g00007 351 MobiDBLite consensus disorder prediction 68 101 - -
Stsc90931g00007 351 CDD DnaJ 4 59 IPR001623 -
Stsc90931g00007 351 Gene3D - 173 252 - -
Stsc90931g00007 351 Gene3D DnaJ domain 3 136 IPR036869 -
Stsc90931g00007 351 FunFam Dnaj homolog subfamily b member 171 252 - -
Stsc90931g00007 351 PRINTS DnaJ domain signature 6 24 IPR001623 -
Stsc90931g00007 351 PRINTS DnaJ domain signature 62 81 IPR001623 -
Stsc90931g00007 351 PRINTS DnaJ domain signature 24 39 IPR001623 -
Stsc90931g00007 351 PRINTS DnaJ domain signature 42 62 IPR001623 -
Stsc90931g00007 351 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Stsc90931g00007 351 SUPERFAMILY HSP40/DnaJ peptide-binding domain 169 264 IPR008971 GO:0006457|GO:0051082
Stsc90931g00007 351 SUPERFAMILY HSP40/DnaJ peptide-binding domain 256 342 IPR008971 GO:0006457|GO:0051082
Stsc90931g00007 351 SMART dnaj_3 3 62 IPR001623 -
Stsc90931g00007 351 CDD DnaJ_C 173 336 - -
Stsc90931g00007 351 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Stsc90931g00007 351 Gene3D - 254 334 - -
Stsc90931g00007 351 SUPERFAMILY Chaperone J-domain 3 105 IPR036869 -
Stsc90931g00007 351 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 343 - -
Stsc90931g00007 351 Pfam DnaJ C terminal domain 175 333 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90931g00007 Stsc-Chr90931 39225 41440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90931g00007 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 1.95e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90931g00007 K09510 - gmx:100797487 541.576