Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90930g00001 ATGTGTATCCGAGGATTCAGGTTTTTGATAAATGCTTGCATTTTGTTGTCATTGACCTCTTTAATTTCTGCTCTGGAACCCCAACTTGGATCCACCCGCGTTGTCTTTCAGACAAATTATGGGGATATTGAATTTGGTTTCTTTCCAACTGTTGCACCCAAAACTGTTGATCACATCTTTAAGCTTGTCAGACTTGGAGGCTATAACACTAACCATTTCTTTAGGGTGGATAAGGGGTTTGTGGCCCAAGTAGCAGATGTCATGGGCGGAAGATCTGCTTCGATGAATGAGGAACAAAGAAAAGAAGCTGAAAAGACTGTTGTTGGCGAATTTAGCAAAGTCAAACATGTTCGTGGTATTCTTTCTATGGGAAGGTACGAGGATCCAGACAGCGGTTCATCCTCATTCTCGATACTACTTGGAGATGCTCCCCACCTTGATGGCACGTATGCAATATTTGGGAAAGTTACTAAAGGTGATGATACATTAAAAAAGCTCGAGCAGCTGCCTACCCGTAAAGAGGGTATATTTGTAATGCCAACAGAACGCATCACTATCCTATCATCATATTACTATGACACAGAGACGGACAACTGTGAGCAAGATAGATCGATATTGAAGCGCAGGTTAGCTGCAACAGCAGTCGAAGTTGAAAAACAGAGGATGAAATGCTTCCCTTGA 681 0.4229 MCIRGFRFLINACILLSLTSLISALEPQLGSTRVVFQTNYGDIEFGFFPTVAPKTVDHIFKLVRLGGYNTNHFFRVDKGFVAQVADVMGGRSASMNEEQRKEAEKTVVGEFSKVKHVRGILSMGRYEDPDSGSSSFSILLGDAPHLDGTYAIFGKVTKGDDTLKKLEQLPTRKEGIFVMPTERITILSSYYYDTETDNCEQDRSILKRRLAATAVEVEKQRMKCFP 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90930g00001 226 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 35 191 IPR002130 GO:0000413|GO:0003755
Stsc90930g00001 226 SUPERFAMILY Cyclophilin-like 26 194 IPR029000 -
Stsc90930g00001 226 CDD cyclophilin 35 188 - -
Stsc90930g00001 226 Gene3D - 23 199 IPR029000 -
Stsc90930g00001 226 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 13 226 IPR044233 -
Stsc90930g00001 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 163 IPR002130 GO:0000413|GO:0003755
Stsc90930g00001 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 73 85 IPR002130 GO:0000413|GO:0003755
Stsc90930g00001 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 62 IPR002130 GO:0000413|GO:0003755
Stsc90930g00001 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Stsc90930g00001 226 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 34 188 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90930g00001 Stsc-Chr90930 9710 12741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90930g00001 34 189 U-box Gene Family AT5G67530 28.750 3.28e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90930g00001 - - gmx:100819238 389.423