Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90928g00006 ATGAAGCTTATGATGATGTTATCTTTCAAACTACTTTTGTTCTCATTATTTTTGTGTATGTTCATGAATTTGTCAATCACCAAATGCAAGGCCCATAATAACCAACAAGGTGAATATCTCTCTAACTTGATTCATTCAAAGAGATCTCCTAAGAATCCATCATCATCATCACAATCATCACTACATAACAATAATGGAGAATTAGAAGAAGCTTTCACTACTTCTTATCTTCCACAACTATATGTTGTGGATGATCATCAACAATCTAAAGAAGATGATAGAGTTGAAGCTTTGCCAGGACAACCTCAAGGAGTGGATTTTGATCAATATGCTGGCTATGTAACTGTTGATTCAAACAAAGGAAAAGCACTCTTCTACTACTTTGTGGAGTCACCTCAAAATTGTTCTTCCAAACCTCTTGTTCTATGGCTAAATGGAGGGCCAGGGTGCTCTTCTCTGGGGTACGGAGCAATGCAAGAATTGGGACCTTTTAGAATCAATAGTGATGGAAGAACACTTTACAGAAATCCCTATGCATGGAACAAGGTTGCAAACGTGATTTTCCTAGAGTCACCAGCAGGTGTTGGATTTTCATATTCAAACACTACCTCGGACTATGCTAACACTGGTGACAACAGCACTGCCTTGGATTCCTACACATTCCTTGTGAAGTGGCTTGACAGATTCCCACACTACAAAACTCGTGACTTCTTCATAACAGGAGAAAGCTATGCCGGCCATTATGTCCCTCAACTCGCTCACACTATCCTCTCCTACAACAAGATCGCCGCGTCGAATCATCAAACAGTAATCAACCTCAAAGGAATCGCGGTCGGGAATGGATGGATAGATGATAGTTTGTGTACAAAGGGTATGTATGATTATTTCTGGTCACATGGTCTAAGCTCTGATGAATCCCATTCAGGAATTGAAAAAAACTGTGACTATGTTAGTGGTAATTTCTCTGATGAATGTGACAAATATATAAGCATGGCTGATGATGAAGTTGGTGATATTAACATATACAGCATATATGCTCATCTTTGTGATTCTTCTTCATCTGCTTCAAAATCTCAAGGCAGTGAGTTCGACCCTTGTTCTGATGATTACACAGATTCTTACTTGAATCTCCCAGAAGTTCAAAAGGCCCTTCATGCTAAAGCCACAAATTGGTCTGCTTGCAGCTCCGTGGGATGGACTGATAGTCCATCAAGTATGCTACCAACTATAAAGAAATTAATATCAAGTAACATAAGCATATGGATTTATAGTGGAGACACAGATGGTCGTGTTCCCATAACTTCATCTAGGTATTCAATAAATGCCCTCAAACTTCCATTACAGACACCATGGCGTTCATGGTCTTCTGCCAATGAGGTTGGAGGATATGTTGTAGGGTATAAAGGGCTTACTCTCATAACTGTAAGAGGAGCAGGGCACACTGTTCCAAGCTACCAACCTCAGAGGGCACTAACCATGATCTCACATTTTCTTAATGGAGAACTTCCACCACAGAATTAA 1521 0.3991 MKLMMMLSFKLLLFSLFLCMFMNLSITKCKAHNNQQGEYLSNLIHSKRSPKNPSSSSQSSLHNNNGELEEAFTTSYLPQLYVVDDHQQSKEDDRVEALPGQPQGVDFDQYAGYVTVDSNKGKALFYYFVESPQNCSSKPLVLWLNGGPGCSSLGYGAMQELGPFRINSDGRTLYRNPYAWNKVANVIFLESPAGVGFSYSNTTSDYANTGDNSTALDSYTFLVKWLDRFPHYKTRDFFITGESYAGHYVPQLAHTILSYNKIAASNHQTVINLKGIAVGNGWIDDSLCTKGMYDYFWSHGLSSDESHSGIEKNCDYVSGNFSDECDKYISMADDEVGDINIYSIYAHLCDSSSSASKSQGSEFDPCSDDYTDSYLNLPEVQKALHAKATNWSACSSVGWTDSPSSMLPTIKKLISSNISIWIYSGDTDGRVPITSSRYSINALKLPLQTPWRSWSSANEVGGYVVGYKGLTLITVRGAGHTVPSYQPQRALTMISHFLNGELPPQN 506
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc90928g00006 506 ProSitePatterns Serine carboxypeptidases, histidine active site. 470 487 IPR033124 GO:0004185
Stsc90928g00006 506 ProSitePatterns Serine carboxypeptidases, serine active site. 239 246 IPR018202 GO:0004185
Stsc90928g00006 506 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 94 487 IPR001563 GO:0004185|GO:0006508
Stsc90928g00006 506 Pfam Serine carboxypeptidase 99 500 IPR001563 GO:0004185|GO:0006508
Stsc90928g00006 506 Gene3D - 406 500 - -
Stsc90928g00006 506 FunFam Carboxypeptidase 89 351 - -
Stsc90928g00006 506 FunFam Carboxypeptidase 363 502 - -
Stsc90928g00006 506 Gene3D - 366 397 - -
Stsc90928g00006 506 Gene3D alpha/beta hydrolase 86 360 IPR029058 -
Stsc90928g00006 506 SUPERFAMILY alpha/beta-Hydrolases 95 501 IPR029058 -
Stsc90928g00006 506 FunFam Carboxypeptidase 406 500 - -
Stsc90928g00006 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 189 199 IPR001563 GO:0004185|GO:0006508
Stsc90928g00006 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 225 250 IPR001563 GO:0004185|GO:0006508
Stsc90928g00006 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 176 188 IPR001563 GO:0004185|GO:0006508
Stsc90928g00006 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 470 483 IPR001563 GO:0004185|GO:0006508
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc90928g00006 Stsc-Chr90928 37128 43366 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90928g00006 374 501 Calmodulin-binding Proteins AT2G22960 29.851 1.21e-10 58.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90928g00006 K16297 - gmx:100818983 681.019