Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90928g00005 ATGGAACAGCAACAACAGCAATCCAACGGTTCTGATTCGCCGCAACAAAAACAACAACAGCAGCAACCGTCGTCGGAGAGCCAGCAGCAGCCGCAACAGCCGAAGCGGCAACCTCCGCCGGCGGTGGCCGTGGCGACGCAGCAGTGGATGCCTTATCCTGCGGCGGCGATGGTAATGCAGCATCACATGTTGCCGCCGCAGCACTACGCCCCGCCGCACTACGTGCCTTATCATCATCCCTACCACGCGCCGGCTCCACCTCCGCCGCCTCACGTGGCTCACCACAACCACCAGCATGGATCCGGCGGCGGGGAGAACAAGACGGTTTGGGTTGGAGATTTGCATCACTGGATGGATGAGAGCTATCTCCATCGATGCTTTGCTTCCACCGGCGAGATTTCGTCCATCAAGCTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTTGAATTTCTTTCACATGCCACAGCTGAGAAGGTTTTACAGAGTTATGCTGGAATTTTGATGCCGAACACAGAGCAACCTTTCCGCCTGAACTGGGCAACATTTAGTACAGGAGAGAAGTCCTCAGACAATGTTCCTGATCTTTCGATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGACAGTTTGTTGCATGAAACTTTTGCTAGCGTGTTTCCTTCTGTTAAAGCTGCTAAAGTTGTCTTTGATGCCAATACTGGCCGTTCGAAGGGCTATGGTTTCGTTAGGTTTGGAGATGATAATGAGAGGACGAAAGCTATGACTCAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGCGCTGCAACTCCAAGGAAATCATCTGGCCATCAACAAGGAGGCCAGACAAATGGCACATCTAGCCAATCTGAAGCGGATTCTACAAACACAACTATATTTGTCGGAGGACTCGACCCAAATGTTACAGATGAAGATCTTAGGCAGCAATTCTCCCAGTATGGTGAAATAGTATCTGTTAAGATACCTGTTGGAAAGGGAAATAATGCGGAAGAGGCATTGCAGAAGCTAAATGGGACAGTGATTGGCAAGCAAACGGTTCGTCTTTCTTGGGGCCGTAATCCAGCAAATAAGCAGTTTAGAATGGACTTTGGTGGCAACCACTGGAGTGGCGCCTATTACGGAGCCCCTGTTTATGATGGTTATGGATATGCATTGCCTCCTCCTCATGATCCAAGCATATATGCCGCCGCATATGCCGCTTACCCTATCTATGGAGGCCACCAACAACAAGTAAACTGA 1284 0.4938 MEQQQQQSNGSDSPQQKQQQQQPSSESQQQPQQPKRQPPPAVAVATQQWMPYPAAAMVMQHHMLPPQHYAPPHYVPYHHPYHAPAPPPPPHVAHHNHQHGSGGGENKTVWVGDLHHWMDESYLHRCFASTGEISSIKLIRNKQTGLSEGYGFVEFLSHATAEKVLQSYAGILMPNTEQPFRLNWATFSTGEKSSDNVPDLSIFVGDLAADVTDSLLHETFASVFPSVKAAKVVFDANTGRSKGYGFVRFGDDNERTKAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQTNGTSSQSEADSTNTTIFVGGLDPNVTDEDLRQQFSQYGEIVSVKIPVGKGNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRMDFGGNHWSGAYYGAPVYDGYGYALPPPHDPSIYAAAYAAYPIYGGHQQQVN 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90928g00005 427 SUPERFAMILY RNA-binding domain, RBD 199 370 IPR035979 GO:0003676
Stsc90928g00005 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 279 IPR000504 GO:0003723
Stsc90928g00005 427 SUPERFAMILY RNA-binding domain, RBD 70 187 IPR035979 GO:0003676
Stsc90928g00005 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 361 IPR000504 GO:0003723
Stsc90928g00005 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 271 IPR000504 GO:0003723
Stsc90928g00005 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 176 IPR000504 GO:0003723
Stsc90928g00005 427 CDD RRM2_SECp43_like 199 278 - -
Stsc90928g00005 427 CDD RRM1_SECp43_like 108 188 - -
Stsc90928g00005 427 MobiDBLite consensus disorder prediction 1 32 - -
Stsc90928g00005 427 SMART rrm1_1 306 364 IPR000504 GO:0003723
Stsc90928g00005 427 SMART rrm1_1 108 183 IPR000504 GO:0003723
Stsc90928g00005 427 SMART rrm1_1 201 275 IPR000504 GO:0003723
Stsc90928g00005 427 MobiDBLite consensus disorder prediction 275 312 - -
Stsc90928g00005 427 Gene3D - 106 186 IPR012677 -
Stsc90928g00005 427 Gene3D - 294 398 IPR012677 -
Stsc90928g00005 427 MobiDBLite consensus disorder prediction 1 44 - -
Stsc90928g00005 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 368 IPR000504 GO:0003723
Stsc90928g00005 427 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 94 372 - -
Stsc90928g00005 427 MobiDBLite consensus disorder prediction 280 311 - -
Stsc90928g00005 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 187 IPR000504 GO:0003723
Stsc90928g00005 427 FunFam Polyadenylate-binding protein RBP47B 106 186 - -
Stsc90928g00005 427 FunFam Polyadenylate-binding protein RBP47B 188 290 - -
Stsc90928g00005 427 Gene3D - 187 293 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90928g00005 Stsc-Chr90928 32532 36916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90928g00005 106 373 Eukaryotic Initiation Factors Gene Family AT1G71770 25.352 2.65e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90928g00005 - - adu:107495791 694.886