Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90927g00004 ATGGATCAGTATGAGATCATGGAACAGATCAGAAGAGGTGCTTACTTTCCTGAGGAGAAACTCTGCAAATGGTTCACTCAATTACTTTTGGCAGTGGAATACTTGCATTCAAATTTCTTTTTACATCGTGACCTAAAGTGTTCCAACAGTTTTCTTACCAAGGATCAAGATGTTCGCCTGGGAGAGTTTATCTACCATCTTTTACTACATTGGGATTTTGAGCTCGCTAAGACGCTAAAAGCAGACGATTTGGCTTCATCGTGGGTATTGAGAGCGGGAGCACCGTGGGGGAAACGCCCAAGCTTCTAA 309 0.4304 MDQYEIMEQIRRGAYFPEEKLCKWFTQLLLAVEYLHSNFFLHRDLKCSNSFLTKDQDVRLGEFIYHLLLHWDFELAKTLKADDLASSWVLRAGAPWGKRPSF 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90927g00004 102 Gene3D Transferase(Phosphotransferase) domain 1 1 101 - -
Stsc90927g00004 102 SUPERFAMILY Protein kinase-like (PK-like) 4 63 IPR011009 -
Stsc90927g00004 102 ProSiteProfiles Protein kinase domain profile. 1 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90927g00004 102 Pfam Protein kinase domain 3 63 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90927g00004 102 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 8 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90927g00004 Stsc-Chr90927 28110 29267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90927g00004 4 102 MAP Kinase Gene Family AT4G01370 33.654 1.21e-08 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Stsc90927g00004 Pkinase 3.4e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90927g00004 K08857 - zju:107410239 123.25