Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90926g00002 ATGGATGATTCACTATCAGTTCATGTTGGTTCTCCTGCTAAGTTTGAGTTGTCTTATGAACAACCACAAAAACAAATCAAGCTTATGATGGGCCAAACAACAACCTTTGAGCCTCAACCCTCTCCTTCTATCATCCAAAAGGGTATTGCTGAGATTGCTGGTACATACATACTTATATTTTGTGGGTGCGGAGCTGCACTTGTCAACCAGAAATTACCAATTACAATAATAGGGATAGCAATTGTTTCGGGTCTAGCTTTGACGGTGGCTATATATTCAGTTGGTCATGTCTCTGGTGGTCATTTTAACCCCGCCGTTACAATTGCTCTAGCGGTTGTCAGAAAATTTCAATTGAAACTCGCGCCTGTGTATGTGATGTGCCAGTTGGTGGGATCAACGTTGGCCACAATGAGCCTCAAAGTGTTGTATCATGGCAAAGTTGATTTTGGAGTGACACTCACCAAATACACTTCTCCAACTTCTAATCTTGATGCTTTACTCTGGGAAATTATAATCACTTCTATACTCATGTTCACCATTTGTGGTGTTGCCACTGATCATAGAGGGAGCAAAGACCTTGCTGGAGTTGCTATAGGCATTGCAGTTCTGATAAACATCGTAATTGCAGGACCTACTACTGGGGCTTCCATGAATCCTGCAAGGAGTTTAGGCCCTGCAATAGTCTTAGGTGTTTACAAAAATGTTTGGGTTTACATCATAGGTCCTACACTTGGAGCAATCTTAGCAAGTATGGTATACATGTTCTTAAGGGTCCCCCAACAAACAAAACCATAA 795 0.4164 MDDSLSVHVGSPAKFELSYEQPQKQIKLMMGQTTTFEPQPSPSIIQKGIAEIAGTYILIFCGCGAALVNQKLPITIIGIAIVSGLALTVAIYSVGHVSGGHFNPAVTIALAVVRKFQLKLAPVYVMCQLVGSTLATMSLKVLYHGKVDFGVTLTKYTSPTSNLDALLWEIIITSILMFTICGVATDHRGSKDLAGVAIGIAVLINIVIAGPTTGASMNPARSLGPAIVLGVYKNVWVYIIGPTLGAILASMVYMFLRVPQQTKP 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90926g00002 264 Gene3D Glycerol uptake facilitator protein. 13 263 IPR023271 -
Stsc90926g00002 264 ProSitePatterns MIP family signature. 101 109 IPR022357 -
Stsc90926g00002 264 PRINTS Major intrinsic protein family signature 83 107 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc90926g00002 264 PRINTS Major intrinsic protein family signature 199 221 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc90926g00002 264 PRINTS Major intrinsic protein family signature 120 139 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc90926g00002 264 PRINTS Major intrinsic protein family signature 46 65 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc90926g00002 264 PRINTS Major intrinsic protein family signature 168 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc90926g00002 264 PRINTS Major intrinsic protein family signature 236 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc90926g00002 264 NCBIfam MIP family channel protein 50 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc90926g00002 264 SUPERFAMILY Aquaporin-like 41 260 IPR023271 -
Stsc90926g00002 264 Pfam Major intrinsic protein 42 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc90926g00002 264 CDD MIP 46 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc90926g00002 264 PANTHER AQUAPORIN NIP2-1 20 260 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90926g00002 Stsc-Chr90926 43120 48560 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90926g00002 41 261 Major Intrinsic Protein MIP AT5G37820 49.561 3.66e-68 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90926g00002 K09874 - gmx:100798380 355.525