Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90924g00004 ATGGAATCCAATAATGGTGAAGATTATACTCAAAATTTGCTTCTAGCTCAAACCCACGTATGGAATCAAATTTTCAGCTTCATGAACTCCATGTCCCTTAAATGTGCAATTGAATTGAACATAATTGATGTTGTTCACAATTATGGCCAACCCATGCCATTCTCAGAACTCGTTGCTTCTTTACCAATCCACCCATCGAAATTCGCCTTCGTCGGCCGCTTGATGCGAATTTTGACACTTTCCGGCGTTTTCTCTCAGCAAAATGATGATGAGCTCCAAGAAGAGAGGTATGTGCTAACTAATGCATCTAAAATATTGCTTAAGGATCACCCTTTTTGCATGACACCATTCTTGGATGTAATTCTTGATCCAAATTTGGTAAAACCATGGTACCAACTCTCTAATTGGTTCAAGAAATGTGACACTAATAATTCGCCATTCGAATCGGAACATGGGATGTCATTTTGGGAATTTGCTAGCCATGACAAAAAGCTTGGTAGTAGTTTCCATGATGCCATGACAAGTGACTCTAGATTGGCTTCAAGTGTGGTGGTTGAGAAGTTTAAGGGTGTGTTTGAAGGGGTGGAATCTTTGGTTGATGTTGGTGGAGGGAATGGAACTATGGCTAAGGCCATAGCTAAATTATTCCCACAAATGGAGTGCATTGTGTTTGATCTTTCACATGTTGTTGCTGGCTTGGAAGGAAGTAGTAGTGAGAACTTGAAATATGTTGGAGGCAACATGTTTGAGGCAATTCCTTCTGCAGATGCTGTTTTGTTGAAGTGCATATTACACAACTGGAATGATGAGGAATGTGTAAAACTCTTGAAGAAATGCAAGGAGGCAATAATAACGAAGAAGGGCAAAAAAGGAAAAGTGATAATAATAGACATAGTGGTAGGGAATGAGAATGGAGATAAAGGATCACTGGAAACGCAAATCTTTTATGATATGGCCATGATGATCTTTGTCAACGGAAAGGAGAGAAATGAGAAAGAATGGTCCAAGCTATTTTTCTCTTCTGGTTTCAATAATTACAAGATAATTCCAATTATGATGAGTTCAAGGTCCTTGATTGAAGTTTATCCATAG 1092 0.3883 MESNNGEDYTQNLLLAQTHVWNQIFSFMNSMSLKCAIELNIIDVVHNYGQPMPFSELVASLPIHPSKFAFVGRLMRILTLSGVFSQQNDDELQEERYVLTNASKILLKDHPFCMTPFLDVILDPNLVKPWYQLSNWFKKCDTNNSPFESEHGMSFWEFASHDKKLGSSFHDAMTSDSRLASSVVVEKFKGVFEGVESLVDVGGGNGTMAKAIAKLFPQMECIVFDLSHVVAGLEGSSSENLKYVGGNMFEAIPSADAVLLKCILHNWNDEECVKLLKKCKEAIITKKGKKGKVIIIDIVVGNENGDKGSLETQIFYDMAMMIFVNGKERNEKEWSKLFFSSGFNNYKIIPIMMSSRSLIEVYP 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90924g00004 363 PANTHER O-METHYLTRANSFERASE 16 347 IPR016461 GO:0008168
Stsc90924g00004 363 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Stsc90924g00004 363 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 363 IPR016461 GO:0008168
Stsc90924g00004 363 Gene3D - 2 106 IPR036388 -
Stsc90924g00004 363 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 361 IPR029063 -
Stsc90924g00004 363 PIRSF O-mtase 1 363 IPR016461 GO:0008168
Stsc90924g00004 363 FunFam O-methyltransferase ZRP4 108 363 - -
Stsc90924g00004 363 Pfam O-methyltransferase domain 130 344 IPR001077 GO:0008171
Stsc90924g00004 363 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
Stsc90924g00004 363 FunFam Coniferyl alcohol 9-O-methyltransferase 3 106 - -
Stsc90924g00004 363 Gene3D Vaccinia Virus protein VP39 108 363 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90924g00004 Stsc-Chr90924 28181 31035 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90924g00004 31 349 Monolignol Biosynthesis Gene Families AT5G54160 33.129 7.08e-50 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90924g00004 - K16040 gmx:100781008 431.024