Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90920g00004 ATGGGAAGGCACTCTTGCTGTTACATTCAGAAGCTTCGAAAGGGTCTGTGGTCACCCGAGGAGGATGAGAAACTTCTCATGCATGTTACTAAGTATGGCCATGGATGTTGGAGCTCTGTGCCTAAGCAAGCAGGTTTGCAAAGGTGTGGTAAGAGCTGCAGGCTTAGGTGGATAAATTACTTAAGGCCTGATTTGAAGAGAGGTACATTCTCAAAGGAAGAAGAGAACCTTATCATTCAGCTTCATGCAGCATTGGGCAATAGATGGTCACAAATTGCAGCACAATTGCCGGGGAGGACAGACAATGAGATAAAGAATCTATGGAATTCTTGCTTGAAGAAGAAACTGAGGCAAAAAGGTATAGACCCTGTGACACACAAGAAGATTCCGGAGGGCGAGAACGGCGGTGAGGACAATGGCATGAGGAAGAGGAGCCAAGAAAAGGCAGCATAA 453 0.4614 MGRHSCCYIQKLRKGLWSPEEDEKLLMHVTKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSKEEENLIIQLHAALGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKKIPEGENGGEDNGMRKRSQEKAA 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90920g00004 150 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc90920g00004 150 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc90920g00004 150 FunFam Myb transcription factor 11 67 - -
Stsc90920g00004 150 Gene3D - 14 66 - -
Stsc90920g00004 150 FunFam MYB transcription factor 68 129 - -
Stsc90920g00004 150 CDD SANT 17 61 IPR001005 -
Stsc90920g00004 150 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc90920g00004 150 SMART sant 13 63 IPR001005 -
Stsc90920g00004 150 SMART sant 66 114 IPR001005 -
Stsc90920g00004 150 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Stsc90920g00004 150 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc90920g00004 150 CDD SANT 69 109 IPR001005 -
Stsc90920g00004 150 PANTHER MYB DOMAIN PROTEIN 55 1 139 - -
Stsc90920g00004 150 MobiDBLite consensus disorder prediction 122 150 - -
Stsc90920g00004 150 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Stsc90920g00004 150 Gene3D - 68 133 - -
Stsc90920g00004 150 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90920g00004 Stsc-Chr90920 25350 26663 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90920g00004 1 138 MYB Transcription Factor Family AT4G01680 86.957 6.30e-89 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc90920g00004 Myb_DNA-binding 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90920g00004 K09422 - gmx:100815881 282.722