Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90920g00003 ATGACGAGAAAGAAGGTGAAGTTGGCTTATATTTCTGATGACTCAGCAAGAAAAGCAACATTCAAGAAAAGGAAGAGGGGGATTCTGAAGAAGGTAACTGAACTCACTGTTCTATGTGGGATTGAAGCTTGTGCTATAATCTCAAACCCCTTTGATTCCAAAGCAGCAGAGGTTTGGCCAGATCCAGAGACTGCCAAAGAAGTGATTGAGAAGTATCATAATTCATCTGCCATTGACGAGAGCAAGAACATGAACCAAGAAAGTTTCATGCTACAGAGAATCGCTAAGGCCAAGGAGTTGCTAAAGAAGAAGCGTAGGGAGAATCGTGAAAAGGAAATGATTCTGTCTATGTATAAGTACATGAAGAGTGATCAAGACCTACCCGAAAACATGACCATTGCGGATTTGAAAGAGCTTGATGATCTAATTGACAGGAGTATGAAGGACGTCGAAACCAAGATGGTGGATCAACTTGATGAAGATAGTGAATAG 492 0.4106 MTRKKVKLAYISDDSARKATFKKRKRGILKKVTELTVLCGIEACAIISNPFDSKAAEVWPDPETAKEVIEKYHNSSAIDESKNMNQESFMLQRIAKAKELLKKKRRENREKEMILSMYKYMKSDQDLPENMTIADLKELDDLIDRSMKDVETKMVDQLDEDSE 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90920g00003 163 SUPERFAMILY SRF-like 1 84 IPR036879 GO:0003677|GO:0046983
Stsc90920g00003 163 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Stsc90920g00003 163 Coils Coil 91 114 - -
Stsc90920g00003 163 PANTHER MADS BOX PROTEIN 3 154 - -
Stsc90920g00003 163 Gene3D - 13 122 IPR036879 GO:0003677|GO:0046983
Stsc90920g00003 163 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Stsc90920g00003 163 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc90920g00003 163 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc90920g00003 163 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Stsc90920g00003 163 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90920g00003 Stsc-Chr90920 13880 14371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90920g00003 1 154 Type I MADS-box Gene Family AT5G48670 47.097 7.43e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc90920g00003 SRF-TF 4.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90920g00003 - - gmx:100792290 190.66