Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90916g00007 ATGTCGGAAGGTGCTGAAATAGATGAGCGTGTGGACTTTGATGATGAGAATTACATGGAAGAGATGGATGATGATGATGTAGAGGAACAATCAGATGGCGATGATGATGATGATGGTGATGCTGACGATAATAATAACAACGATAATGATAACGATAATGATGACGACGACGATGATGATGATGATGGAGTGGATGGACAGGGTGAGGAAAATGCTGAAGAACAGGAATATGAGGACTCAGGGGAGGAAGCTGGTGGGAAAGACCAAATGGCTGAAGCGGATAGAAGTGGCATTGCCACCGAGTCTGAAGGAGATGGGCTGAAACCACCTTACATTGATGAAGAAGAGAAACAGAAGCATGATGAACTTCTTGCACTGCCTCCTCATGGTTCTGAAGTTTTTATTGGTGGACTTCCTCGGGATGTTTGCGAGGATGATTTGAGGGAATTGTGTGAATCAATGGGTGAAATTTTTGAGGTACGATTGATGAAAGACAGGGACAGTGGAGAAGGTAAGGGGTATGCTTTTGTGGCTTTCAAAACAAAAGAGGTTGCACAAAACGCCATAGAAGAGATACACAACAAGAAATATAAGGGTAAAACTTTGAGGTGTTCACTATCTGAGACAAAACAAAGATTGTTCATTGGTAATGTTCCGAAAACTTGGACTGAGGAGGAGTTCAGGAGAGTAGTTGAGGGTGTTGGTCCTGGAGTTGAAGTCATTGAGCTCTTTAAGGATGCGCAAAATCCTAGCAGGAACCGTGGGTTTGCCTTCGTGTCGTATTACAATAATGCATGCGCAGACTATTCACGGCAGAAAATGTCAACTGCAGGTTTTAAGCTGGAAGGCAATACCCCAACTGTCACATGGGCAGATCCAAAGAATTCGCCTGATCATTCTGCTGCTGCTCAGGTTAAAGCACTTTATGTGAAGAACATACCTGAGAATACAACTACCGAACAACTGAAGGAACTATTCTCTCGTCATGGAGAAGTAACAAAAGTAGTCATGCCACCTAGCAAAGCCGGAGGGAAGCGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTAAAGGCTGTAAAAGACAACGAGAAATACGAAGTTGACGGCCAATTGCTCGAGGTTGTTCTTGCCAAACCACAAGCTGAGAAAAAACCCGATATGGGTTATGGCTACAATCCTGGACTTCCACTTCCTGGATATGGTGGTGCTTTTTCCGGAAATCCATATGGCTCAGCGATAGGTGCTGCAGGAGCTGGATATGGTGTTGCTCCTAGCTTTCAGCAGCCGCAGCAACCAGTGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAGATGGTTCCGATGGTATTACCGGATGGCAGAATCGGCTATGTCTTTCAACAGCCTGGTGTACAGATGCCGGCACCTCGTCCACGCGGGCCTGGTAGGGGCAACAGTTCAGGGGGTCATGGAGGAAGAGGTGGAGGTAGCGGCAATGAGGGCAGTGGCAAACGCGGCCGGAGGTATCAACCGTACTAG 1533 0.4625 MSEGAEIDERVDFDDENYMEEMDDDDVEEQSDGDDDDDGDADDNNNNDNDNDNDDDDDDDDDGVDGQGEENAEEQEYEDSGEEAGGKDQMAEADRSGIATESEGDGLKPPYIDEEEKQKHDELLALPPHGSEVFIGGLPRDVCEDDLRELCESMGEIFEVRLMKDRDSGEGKGYAFVAFKTKEVAQNAIEEIHNKKYKGKTLRCSLSETKQRLFIGNVPKTWTEEEFRRVVEGVGPGVEVIELFKDAQNPSRNRGFAFVSYYNNACADYSRQKMSTAGFKLEGNTPTVTWADPKNSPDHSAAAQVKALYVKNIPENTTTEQLKELFSRHGEVTKVVMPPSKAGGKRDFGFIHYAERSSALKAVKDNEKYEVDGQLLEVVLAKPQAEKKPDMGYGYNPGLPLPGYGGAFSGNPYGSAIGAAGAGYGVAPSFQQPQQPVIYGRGPMPAGMQMVPMVLPDGRIGYVFQQPGVQMPAPRPRGPGRGNSSGGHGGRGGGSGNEGSGKRGRRYQPY 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90916g00007 510 Gene3D - 212 292 IPR012677 -
Stsc90916g00007 510 SUPERFAMILY RNA-binding domain, RBD 302 407 IPR035979 GO:0003676
Stsc90916g00007 510 MobiDBLite consensus disorder prediction 1 111 - -
Stsc90916g00007 510 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 45 211 - -
Stsc90916g00007 510 SMART rrm1_1 212 289 IPR000504 GO:0003723
Stsc90916g00007 510 SMART rrm1_1 132 205 IPR000504 GO:0003723
Stsc90916g00007 510 SMART rrm1_1 307 379 IPR000504 GO:0003723
Stsc90916g00007 510 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 212 292 - -
Stsc90916g00007 510 SMART rrm2_1 132 205 IPR003954 GO:0003676
Stsc90916g00007 510 SMART rrm2_1 307 379 IPR003954 GO:0003676
Stsc90916g00007 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 293 IPR000504 GO:0003723
Stsc90916g00007 510 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 14 494 - -
Stsc90916g00007 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 383 IPR000504 GO:0003723
Stsc90916g00007 510 CDD RRM_SF 133 205 - -
Stsc90916g00007 510 MobiDBLite consensus disorder prediction 467 510 - -
Stsc90916g00007 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 276 IPR000504 GO:0003723
Stsc90916g00007 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 375 IPR000504 GO:0003723
Stsc90916g00007 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Stsc90916g00007 510 Gene3D - 294 415 IPR012677 -
Stsc90916g00007 510 Gene3D - 108 211 IPR012677 -
Stsc90916g00007 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Stsc90916g00007 510 MobiDBLite consensus disorder prediction 8 81 - -
Stsc90916g00007 510 SUPERFAMILY RNA-binding domain, RBD 128 296 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90916g00007 Stsc-Chr90916 44833 48501 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90916g00007 133 440 Eukaryotic Initiation Factors Gene Family AT1G71770 26.000 2.11e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90916g00007 K13161 - gmx:100800974 657.907