Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90916g00003 ATGAGTAGCAAGAAAAATGGAGGAGGAGGAAGAGGATTAGGAGCACCACCGCCACCGAAGGCGGCTCGCACATGCGTGGGGAAGTACGAGCTTGGAAAGACTATTGGAGAAGGAAGCTTCGCGAAGGTTAAGTTTGCGAAGAACGTTGAGAATGGAAACCATGTTGCCATCAAAATCCTTGACAAGTCTCATGTCCTCAAACACAAGATGATTGAACAGCTGAAGAAGGAAATCTCAGCGATGAAGCTGATCAAACATCCAAACGTTGTCAGAATATTTGAGGTTATGGCAAGCAAAACAAAGATATACATTGTTCTAGAGTTGGTTAATGGAGGAGAATTATTTGACAAAATTGCCAGAAATGGAAGACTAAAAGAGGACGAAGCAAGAAGTTATTTTCAACAACTAATCAATGCAGTTGATTATTGCCATAGCAGAGGAGTTTATCATAGAGATTTGAAGCCTGAGAATCTTCTTTTGGACTCGAACGGCGTCCTTAAAGTTTCGGATTTTGGATTGAGTACTTACGCGCAGCGAGAAGATGAACTTCTTCGCACGGCGTGTGGAACCCCGAATTATGTTGCTCCCGAGGTGATCAATGATAGAGGCTATGTTGGATCTGCATCTGATATATGGTCTTGTGGAGTCATTCTCTTTGTGCTCATGGCTGGATACTTGCCTTTTGATGAACCAAATCAAATGGCACTTTACAAGAAAATTGAAAAGGCTCAATTCCATTGTCCATCTTGGTTTTCGTCCGAGGCGAAGAAACTTCTGAAGCGAATTCTGGATCCAAATCCTCTCACAAGGATAAAGATTCCTGAACTCTTGAAAGATCAATGGTTTAGAAAAGGATACAAGCCACCAACGTTTATGGAGGAAGAAGATGTAAATGTAGATGATGTAGCTGCTGCTTTTGATGATTCTAAGGAGAATCTAGTGACAGAGAGAAAAGAGAAACCGGTTTCAATGAATGCTTTTGAACTCATTTCAAGATCACAAAGCTTTAACCTTGACAGCTTGTTTGAGCAGCAAACAGGAATTGTAAAGAGAGAAACACATTTTGCTTCACAACATCCTCCAAACGAAATCATGTCGAAAATTGAGGAAGCTGTCAAGCCTCTGGGATTCAATGTTCACAAGAGAAATTATAAGATGAGGCTACAAGGTGATAAGAGTGGAAGGAAAGGTCATCTTTCGCTAGCTACCGAGGTTTTCGAAGTGGCGCCCTCCTTGCATATGGTGGAGCTGCGAAAAACCGGCGGCGATACACTGGAGTTTCATAAGTTCTATAAAAACTTCTCTTCAGGGTTGCAAGACATAGTTTGGCATACTGAAGGAAAAGTTTGA 1350 0.417 MSSKKNGGGGRGLGAPPPPKAARTCVGKYELGKTIGEGSFAKVKFAKNVENGNHVAIKILDKSHVLKHKMIEQLKKEISAMKLIKHPNVVRIFEVMASKTKIYIVLELVNGGELFDKIARNGRLKEDEARSYFQQLINAVDYCHSRGVYHRDLKPENLLLDSNGVLKVSDFGLSTYAQREDELLRTACGTPNYVAPEVINDRGYVGSASDIWSCGVILFVLMAGYLPFDEPNQMALYKKIEKAQFHCPSWFSSEAKKLLKRILDPNPLTRIKIPELLKDQWFRKGYKPPTFMEEEDVNVDDVAAAFDDSKENLVTERKEKPVSMNAFELISRSQSFNLDSLFEQQTGIVKRETHFASQHPPNEIMSKIEEAVKPLGFNVHKRNYKMRLQGDKSGRKGHLSLATEVFEVAPSLHMVELRKTGGDTLEFHKFYKNFSSGLQDIVWHTEGKV 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90916g00003 449 Gene3D Kinase associated domain 1, KA1 318 444 - -
Stsc90916g00003 449 SUPERFAMILY Protein kinase-like (PK-like) 26 336 IPR011009 -
Stsc90916g00003 449 Gene3D Transferase(Phosphotransferase) domain 1 109 309 - -
Stsc90916g00003 449 CDD CIPK_C 325 438 - -
Stsc90916g00003 449 ProSiteProfiles NAF domain profile. 319 343 IPR018451 GO:0007165
Stsc90916g00003 449 MobiDBLite consensus disorder prediction 1 21 - -
Stsc90916g00003 449 ProSiteProfiles Protein kinase domain profile. 29 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90916g00003 449 Gene3D Phosphorylase Kinase; domain 1 19 108 - -
Stsc90916g00003 449 FunFam Non-specific serine/threonine protein kinase 22 322 - -
Stsc90916g00003 449 SMART serkin_6 29 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90916g00003 449 Pfam NAF domain 321 381 IPR004041 GO:0007165
Stsc90916g00003 449 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Stsc90916g00003 449 FunFam Non-specific serine/threonine protein kinase 20 108 - -
Stsc90916g00003 449 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 26 429 - -
Stsc90916g00003 449 FunFam Non-specific serine/threonine protein kinase 318 444 - -
Stsc90916g00003 449 Pfam Protein kinase domain 29 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90916g00003 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90916g00003 Stsc-Chr90916 19437 23594 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90916g00003 9 447 CBL-interacting serine-threonine protein kinases AT1G01140 72.646 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Stsc90916g00003 Pkinase 4.7e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90916g00003 - - gmx:100794136 764.607