Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90912g00006 ATGGTGACGAACACAAACAAGGTCGTGAAAGTGAAGAGAGACACGCTAAGAGCATGCATGACATGCCCTCTTTGCAGTAACCTTCTCAAAGATGCAACCACCATCTCTCTCTGCCTTCACACATTTTGTAGGAAGTGTATATATGAGAAGCTCTCAGATGAGGAGGTGGATTGCTGTCCTGTGTGTAACATTGATCTCGGCTGCCTTCCGGTCGAAAAACTCAGGGCAGACCATAATTTACAAGATATAAGAGCTAAAATATTTCCTTATAAAAAAAGGAAGACAAATATCAAGGAACCAGAAGTTTTGCCTTCAGTATCTCCACCAGCAAAGAGGAAGGAAAGATCACTTTCGTCATTGGTAGTTAGTGCTCCAAAAGTTTCGGCACAAACCAGCCTTACAGGAAAGAGGACTAAAACTGTTACAAGAAAGGCCGCTGCATTACGCGGGTGCAGTTTTATTCTCGAAGAATCCGTAAAGAAGGAAGAAACAAATGGTGGAGATAACATGGATTCTTCGACACCCGATCCTTCTAAGAAGAACAAATCCAGTGAAAGCGCGGAGAATAGCATAGAACTTACAGAGGGTAAGGCTGATCTCTGGACACCATTGAACTGCCTTGTTGAAGCTGCCAACAGAACAAAGTCCTCCAGGTCAAATTCACAAGCAGTTCCCCCTGCCAAATTGGAATCTCCAACTACTGCACGCGATGGACGAGATATGTCTGAAATCACAAACAAAGCCGAGCTACCTGCTTCAGGTCAGAATGAAATAAGCATTCCAAAATCTAAGAGTAAGGATAATGGCCACAAGGCAAAATTGGGTGATGACAAGGATGGGAACAGCGTGCCCTCGGGACCAGTGAAGCGAAGAAGGTTGCGGCCTTCTGGTCAGAAAAAGGTTGCACCATCTGAGGGGTCTACCTCAGCCCAAGTCATGCTAGATGCGACCCGGGGATATTGCAACAGAAAGAACACCCCTATTTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATGTTCCCTTGCCACAGATCTCAGCATGTTACTTAAGAATAAAGGATGGTACTGTGCCTGTTTCGTTTATTCAAAAGTACCTTGTGAAGAAACTTAATCTTGCCAGTGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAACCAGTGCTGCCATCTCTGCAACTACACAACCTTGTAGATTTGTGGTTCAGAACAGCATCAACCTCAAAAAAGATACCAGCATCTGTAGGATCATCAGCCAAGGATTTTGTTATGGTTTTATCATATTGTCGAAAGGCCTTGCCTCCTTGA 1311 0.4447 MVTNTNKVVKVKRDTLRACMTCPLCSNLLKDATTISLCLHTFCRKCIYEKLSDEEVDCCPVCNIDLGCLPVEKLRADHNLQDIRAKIFPYKKRKTNIKEPEVLPSVSPPAKRKERSLSSLVVSAPKVSAQTSLTGKRTKTVTRKAAALRGCSFILEESVKKEETNGGDNMDSSTPDPSKKNKSSESAENSIELTEGKADLWTPLNCLVEAANRTKSSRSNSQAVPPAKLESPTTARDGRDMSEITNKAELPASGQNEISIPKSKSKDNGHKAKLGDDKDGNSVPSGPVKRRRLRPSGQKKVAPSEGSTSAQVMLDATRGYCNRKNTPIWFSLVASEDQKGDVPLPQISACYLRIKDGTVPVSFIQKYLVKKLNLASEAEVEIMCRGQPVLPSLQLHNLVDLWFRTASTSKKIPASVGSSAKDFVMVLSYCRKALPP 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90912g00006 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 110 IPR013083 -
Stsc90912g00006 436 CDD RING-HC_PCGF 20 63 - -
Stsc90912g00006 436 SMART ring_2 22 62 IPR001841 -
Stsc90912g00006 436 Pfam Zinc finger, C3HC4 type (RING finger) 22 62 - -
Stsc90912g00006 436 MobiDBLite consensus disorder prediction 263 278 - -
Stsc90912g00006 436 MobiDBLite consensus disorder prediction 159 196 - -
Stsc90912g00006 436 MobiDBLite consensus disorder prediction 212 309 - -
Stsc90912g00006 436 ProSitePatterns Zinc finger RING-type signature. 38 47 IPR017907 -
Stsc90912g00006 436 SUPERFAMILY RING/U-box 16 81 - -
Stsc90912g00006 436 MobiDBLite consensus disorder prediction 212 228 - -
Stsc90912g00006 436 MobiDBLite consensus disorder prediction 248 262 - -
Stsc90912g00006 436 ProSiteProfiles Zinc finger RING-type profile. 22 63 IPR001841 -
Stsc90912g00006 436 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 7 434 IPR044807 GO:0004842
Stsc90912g00006 436 Gene3D - 309 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90912g00006 Stsc-Chr90912 20750 25823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90912g00006 8 355 C3H Transcription Factor Family AT2G30580 44.110 4.76e-84 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90912g00006 K16277 - gmx:100783999 696.812