Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90911g00011 ATGTCTCCAACCCTGCTGGTTACCAAGGAGGAAGGGCTGAGCAACGCTTCAACTGTAGCGTCTGCATCTTCGCCGCAATCCTTGGACTGCTTCTCCCAAAATGGAGGGGCTTCCTTGAAAGAACGCAACTACTTGGGTTTGTCCGATTGCTCATCGGTCGACAGTTCAGCTGCGCCCGGCATGCCTGATGAGAAAAAGGACAATCTGAATTTGAAGGCCACTGAGTTGAGGCTTGGCCTTCCTGGATCCCAGTCCCCTGAAAGGGCTCCAGACATTTTCTCATTGAGCTCAACAAAGCTTGATGAGAAACCATTCTTCCCGTTGCTCCCTACAAAAGATGGAATCTGCTCATCAACCCAAAAGACTATAGTTTCAGGAAACAAAAGGGGTTTTGCTGATGCGATGGATGGATTCCCTGAGGGAAAGTTTCCCGGTACTGCAGCGATAAATGTGATGCTATCCCCCAGACCTGCTGGAGCGCAGCCAACTGCGAAGAAGGAAATGCCAAGCAAGGTATTACAAGGACAGCCCGGTGAAGTGAATGGAACAGGAGGTACTGTTGGTGGTAGTTCACCGGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATTAGATCATTTAGGAAAAACTCACTGGCTACCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCAAGCCTGGCAGCACTCTTTGTGAAGGTGAGCATGGATGGTGCTCCATATCTTAGGAAGGTTGATCTGCAGAATTACACGACATACCAGGAACTGTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTATCTTAGGTCAGTGTGGTTCCCATGGGGCTTCAGGAAGAGAAATGATGAGTGAGAGCAAGCTGAAGGATCTCCTGCACGGTTCAGAATATGTACTTACTTATGAAGACAAGGATGGTGACTGGATGCTCGTAGGAGATGTACCATGGGAGATGTTCATTGACACATGCAAGAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGATTAGCTCCCAGGGCTGTGGAAAAATCCAGAAGCAGGAGTTAG 1053 0.4824 MSPTLLVTKEEGLSNASTVASASSPQSLDCFSQNGGASLKERNYLGLSDCSSVDSSAAPGMPDEKKDNLNLKATELRLGLPGSQSPERAPDIFSLSSTKLDEKPFFPLLPTKDGICSSTQKTIVSGNKRGFADAMDGFPEGKFPGTAAINVMLSPRPAGAQPTAKKEMPSKVLQGQPGEVNGTGGTVGGSSPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPSLAALFVKVSMDGAPYLRKVDLQNYTTYQELSSALEKMFSCFILGQCGSHGASGREMMSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAVEKSRSRS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90911g00011 350 ProSiteProfiles PB1 domain profile. 230 334 IPR000270 GO:0005515
Stsc90911g00011 350 SUPERFAMILY CAD & PB1 domains 230 331 - -
Stsc90911g00011 350 MobiDBLite consensus disorder prediction 158 199 - -
Stsc90911g00011 350 Gene3D - 226 344 - -
Stsc90911g00011 350 MobiDBLite consensus disorder prediction 1 32 - -
Stsc90911g00011 350 Pfam AUX/IAA family 74 341 IPR033389 -
Stsc90911g00011 350 MobiDBLite consensus disorder prediction 176 193 - -
Stsc90911g00011 350 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 69 337 IPR003311 GO:0005634|GO:0006355
Stsc90911g00011 350 FunFam Auxin-responsive protein 225 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90911g00011 Stsc-Chr90911 50877 54818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90911g00011 244 330 B3 DNA Binding Superfamily AT1G19220 32.184 4.30e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc90911g00011 AUX_IAA 2.9e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90911g00011 K14484 - gmx:100500373 551.206