Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90907g00005 ATGGAAGTAAAAGGAAGCAGCAACAACAACAAGAGGGTGTTATTAAGCAGCAGCGAGGATGAAGATATGATGGATCTTCGAAGAGGGCCATGGACGGTCGATGAAGACCTCACACTCATCAATTACATTGCCACCCATGGCGAAGGTCGTTGGAACTCCCTTGCTCGTTCTGCTGGACTCAAACGAACTGGGAAGAGCTGTAGATTGAGGTGGCTGAATTATCTTCGCCCTGATGTTAGACGTGGAAACATTACTCTTGAGGAACAACTTCTCATCCTTGAACTGCATACTCGTTGGGGAAATAGGTGGTCTAAAATTGCACAGTATTTACCGGGAAGAACTGATAACGAGATCAAGAACTACTGGAGAACTCGTGTTCAAAAACATGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAGTTTAAGGACGCCATGCGTTACCTTTGGATGCCAAGGCTAGTTGAACGCATTCAAGCAGCCGCAGCCGCGGCCGCAACCACAACCACCGCCCCCGCCACCGGCATTAATAATAATGCATATAGTCACAACAACAACCACCTCAATAACAATTTTGAGGTTCACAATGGTAAAATGGTGCTAACTAATACTACTACTCCTCCTACGGTTATGAATAACAATGATTTTGTGGGTTCACAAATTACCACACAAAGTTACAATACACCGGAGAATAGTAGCACAGCAGCATCATCAGATTCATTTGGGACAACTCAAGTTTCTCCGATCTCCGATTTCAATGATTATAATTACAGTGTTCCGGTTAATAGTAACAACAATATTATTAATCCCGGAGATAATTTCTACCAACCTTGTTCTTCTTCTCAACAAGTTAGTTGCAATAATGAAAACCCTTATGGATTGTTATCTCATCAACAACAACAAGGAATAATGGATCTTCAAACCATGATGATGGTGGAGCCAAACACACCTTGGATGATGCAAAGTGGGGATTCATCGGACAATTTTTGGAATGTTGAGAACATGTTGTTTTTGGAGCAACAACTCATGAATGACAACATGTGA 1044 0.4224 MEVKGSSNNNKRVLLSSSEDEDMMDLRRGPWTVDEDLTLINYIATHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAAAAATTTTAPATGINNNAYSHNNNHLNNNFEVHNGKMVLTNTTTPPTVMNNNDFVGSQITTQSYNTPENSSTAASSDSFGTTQVSPISDFNDYNYSVPVNSNNNIINPGDNFYQPCSSSQQVSCNNENPYGLLSHQQQQGIMDLQTMMMVEPNTPWMMQSGDSSDNFWNVENMLFLEQQLMNDNM 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90907g00005 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 79 IPR017930 -
Stsc90907g00005 347 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 24 212 IPR044676 GO:0003700|GO:0006355|GO:0043565
Stsc90907g00005 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 130 IPR017930 -
Stsc90907g00005 347 FunFam MYB transcription factor 85 148 - -
Stsc90907g00005 347 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Stsc90907g00005 347 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
Stsc90907g00005 347 SMART sant 27 77 IPR001005 -
Stsc90907g00005 347 SMART sant 80 128 IPR001005 -
Stsc90907g00005 347 MobiDBLite consensus disorder prediction 221 243 - -
Stsc90907g00005 347 CDD SANT 30 75 IPR001005 -
Stsc90907g00005 347 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Stsc90907g00005 347 FunFam Myb transcription factor 28 80 - -
Stsc90907g00005 347 SUPERFAMILY Homeodomain-like 25 122 IPR009057 -
Stsc90907g00005 347 Gene3D - 25 81 - -
Stsc90907g00005 347 Gene3D - 85 148 - -
Stsc90907g00005 347 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90907g00005 Stsc-Chr90907 38738 40973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90907g00005 21 338 MYB Transcription Factor Family AT3G06490 55.015 1.07e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc90907g00005 Myb_DNA-binding 5.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90907g00005 K09422 - gmx:100791349 403.675