Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90905g00005 ATGGAACCAAGATCGAATAGCCCCCATACCATTTTTGTGGACAACCTACCACCGGAAGTAAGCAAGAGAGCACTGTATAAGGAGTTTGGAAAGGATGGGTTTTTCTTGGATGTCTTCATCGCGAGAAAGGAGAGAAGGAATATGAATAGTCCGTTTGCATTCATAAGATACCATGCGTATGGTGGTGCGTTGAGAGCCATCAACAGATTGAATGGTACACTATGGTGTGATGCAAAGCTATTTGTAACTCTGTCAGAGTATGGAAGGGAGGCAAATGGAGAAAATAGGAGGCATAATACAGAGACTCTACCAATAAAGAGAGAGATATGGATGCCGAGAAGAGTGGAAGCTAATAAGCCGGGTCAACATGATTATGAGTGTGTTGAACCCCGAAAAGATCCTCACCCAGTGGTAACTGATCAGAAAAAGGAGATTGAGGTTGTGTGGACGGAGGAACAGAACAGAGATTGCAGAGAAGCTTGCTGGGTGTTTACGTGCTTGTTAACATTTGATTCCCCAGAAATCAAAGATGAAGCATTGAACAGTAGCTTATTACAGATGACCTTTGATGAGATTAAGCCACATTAG 588 0.4286 MEPRSNSPHTIFVDNLPPEVSKRALYKEFGKDGFFLDVFIARKERRNMNSPFAFIRYHAYGGALRAINRLNGTLWCDAKLFVTLSEYGREANGENRRHNTETLPIKREIWMPRRVEANKPGQHDYECVEPRKDPHPVVTDQKKEIEVVWTEEQNRDCREACWVFTCLLTFDSPEIKDEALNSSLLQMTFDEIKPH 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90905g00005 195 SUPERFAMILY RNA-binding domain, RBD 4 92 IPR035979 GO:0003676
Stsc90905g00005 195 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Stsc90905g00005 195 Gene3D - 1 119 IPR012677 -
Stsc90905g00005 195 SMART rrm1_1 10 83 IPR000504 GO:0003723
Stsc90905g00005 195 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 74 IPR000504 GO:0003723
Stsc90905g00005 195 CDD RRM_SF 11 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90905g00005 Stsc-Chr90905 34188 34870 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90905g00005 11 97 Eukaryotic Initiation Factors Gene Family AT1G22760 29.885 9.67e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90905g00005 K12891 - ahf:112794598 98.5969