Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90903g00013 ATGGGGATTGAGCCTACTCCCTCCACACCATGCAGTTTCAGTGGATTCCAAGGCGGTTATGGTTCTTCTAATATACAACGAGAGAAGCTTATGTTACAAGAGAAGCAAAGTTTCTCAGCAATAATGGAGTTAGATGATGATGGAGGAGATAATTTGTTCAAAGATCAAAATCAGCAGCATGATGAACATGATCATGATGATGACAATGTTGGTGGCATGATCTTAGAAGATGTGAATTTTGCAGCTGATGGTGATGGTCTTCAACCAATTTCACAAGAGTTTCAAGAAACTACAGAGCTAAAGAATATTATTATTCAAGCACCGTCACCTTTGGCAATAGCATCATTGGAGCTCTTGAGAAACTACGGAAGCAAGTTCAAGAAGCTAAGCGGCGAAAACATAAGCGACAACTTCAGCAACATCATTATTGAGAGTAGTACTTGTTCGGAGAATCAAAGATTGTCAACTGAAGAAATCATGAGAGTTGCAGGTGCAAGGTATGTGCATTACTCTGCACACTGGAATGATGATTTCTGCATCCATATGCATCCTTATGGATTCGATCTTGGAAACTTGTCCGAACAAGAGAACAGAGATGTGGAGCTTGCTCAGTTTCTACTAGCTGCTGCAGAGAGAGTAGGGTGCCATCAATTCGAACGCGCCAGCCGCTTACTCCTCCATTGTCAATGGAATTCAGATGTCAATGCAAACGCTGCTCAGAGGGTTATCTTTCATTTCGCAGAAGCTCTTCGTGAAAGGATCAGTAAAGAAACTGGAAGGGTGGAAGTGGGAATAATGTCATCATCATGTTATGATAATCGGAATGAAGAAACTGAAATGCTTCGAAAGATGAGTATCAACGAGTCCCTTAAATGCCATCAGAAAATGCCTTTCAACCAAGTAATGCAATTCACTGGTATACAAACTATGGTGGAACATCTTGCTTCTGAGACTAAGATACACCTCATTGATCTTGATATCAAAAGCGGAGTGCAGTGTACGGCTCTGATGCAAGCGCTGGCAGAGCGGAAAGAGTGTTGTGTGACATCTCTAAGGGTATCTGCCATTGGAACTTGTGCATACAAGAACAGGATAGAAGATACAGGACAAAGGTTAACATGTTTTGCTGAATCACTAAACCTACCGTTTTCATATAAGGCGGTGATTGTAAAAGATTTGGCAGAAATCAAGTTGGATGATTTTGACGTGGATGATGATGAAGCAGTTGCTGTGTACTCTCCTTATTTTCTGAGGACTCTGATATCGAGGCTTAGTTGCTTGGAAAATTTGATGCTGGTTATAAGGAATATCAAACCCTCTATTATGATAATGTTGGAAATAGACTCTAATCATAACTCGCCTTCTTTTGTGAACCGATTCATCGAAACGCTGTTCTTTTATTCAGCTTTCTTTGATTGTATTGAAACGTGCCTACAAGAAGATGGTGAGAGCAGAATGACAGTGGAAACAGTGTGTTCCAGTGGGATAAGAAATATTGTTGCTGCTGAAGGCACAGAAAGGACAGTTAGGAATGTGAAGTTAGATGTTTGGAGAAGGTTCTTTGCCAGGTATAGAATGGTGGAAACTGGGTTCAGTGAATCTTCGCTTTACCAAGCTAACTTAGTGGCGAGAGAGTTTAATTTTGGCAAGTTCTGCAGTGTGGACAAAAATGGTAAGAGTCTAATTGTTTCATGGAAGGGAACTCCAACGCATTCACTCTCTGCTTGGAGGTTTCTCTCTCTTCTTTTCCCACGTGACATGGGGATTGAGCCTCTTCCATTTAGTTTCAGTGGATTCCAAGGCGGTTGTGGTTCTTCTAAGCAAAGTTTCTCAGCAATAATGGAGTTAGATGGAGGAGATAATTTGTTCAAAGATCAAAACCAGCAACATGAACATGTTCATGATGATGATGATGATGTCAAAGTTGGTGGCATGATCTTAGAAGATGTCAATTTTGCCCCTGATGGTGATGCTCTTCAAGCACCATCATCTTCGGCAATAGCATCATTGGATCTCTTGAAAAACTACGGAAGCAAGTTCAAGAAGCTAAGCGGGGAAAGTGCCTCTTCGGAGAATCAAAGATTGTCAACTGAAGAAATCATGAGAGTTGCAGGAGCAAGGTATGTGCATTACTCTGCGCACTGGAATAATGATGATTTCCGCGTCCCCATGCATCCGTATGGATTCGATCTTGGAAACTTGTCCGAAGAAGAGAACAGAGATGTGGAGCTTGCTCAGTTTCTACTAGCTGCTGCAGAGAGAGTAGGGTGCCAGCAATTTGAACGCGCCAGCCGCTTACTCCTCCATTGTCAATGGAATTCAGATGTCAATGCAAACGCTGCTCAGAGGGTTATCTTTCATTTTGCAGAAGCTCTTCGTGAAAGGATCAGTAGAGAAACTGGAAAGGCTGAAGTGGGAATATCGTCATCAAATGATGATAATAATCAGAATCAGAATCAGAATCAGAATCAAAATCAAGAAACTGAGATGATTCAAAAGATGAGTTTTAACGTCTCCCTTAAGTGCCATCAGAAAATGCCTTTCAACCAAGTAATGCAATTCACTGGTGTACAAACTATGGTGGAACATCTTGCTTGTGAGACCAAGATACACCTCATTGATCTTGATATCAGAAGCGGAGTGCAGTGTACGGCTCTGATGCAAGCGTTGGTGGAGCGGAAAGTGCGTTGTGTGAAGTCTCTAAAGGTATCTGCCATTGGAACTTGTGCATACAAGAACAAGATAGCAGATACAGGGAAAAGGTTAACGAGTTTTGCCGAATCACTGAATTTGCCGTTCTCATATAAGGCGGTGATTGTAACAGATTTGGAAGAAATCAAGTTGGATGATTTTGACCTGGATGGAAATGAAGCTGTTGCTGTGTACTCTTCTTATTTTCTGAGGACTCTGATATCGAGGCCTAATTGCTTGGAGAACTTGATGCTGGTCATAAGGAATATCAAACCATGTATTATGATAGTGATGGAAACAGAATCAAATCATAACTCGCCTTCTTTTGTGAACCGATTCATTGACACGTTGTTCTTCTTTTCAGCATTCTTTGATTGTATTGAAACTTGTCTGCAAGAAGATAGTGAGAGCAGAATGGCAGTGGAAACAGTGTGTTCTGTTGGGATAAGAAACATTGTTGCTGCTGAAGGCACAGAAAGGACAATTAGGAATGTGAAGTTAGATGTTTGGAGAAGGTTCTTCGCCAGGTATCGAATGGTGGAAACTGGTTTCAGTGAATCTTCGCTTTACCAAGCTAACTTAGTTGCCAAAGAGTTTAATTTTGGCAAGTTCTGCAGCGTGGACAAGAATGGTAAGAGTCTAATTGTTTCATGGAAGGGAACTCCAATGCATTCACTCTCAGCTTGGAGGTTTGTATGA 3390 0.4142 MGIEPTPSTPCSFSGFQGGYGSSNIQREKLMLQEKQSFSAIMELDDDGGDNLFKDQNQQHDEHDHDDDNVGGMILEDVNFAADGDGLQPISQEFQETTELKNIIIQAPSPLAIASLELLRNYGSKFKKLSGENISDNFSNIIIESSTCSENQRLSTEEIMRVAGARYVHYSAHWNDDFCIHMHPYGFDLGNLSEQENRDVELAQFLLAAAERVGCHQFERASRLLLHCQWNSDVNANAAQRVIFHFAEALRERISKETGRVEVGIMSSSCYDNRNEETEMLRKMSINESLKCHQKMPFNQVMQFTGIQTMVEHLASETKIHLIDLDIKSGVQCTALMQALAERKECCVTSLRVSAIGTCAYKNRIEDTGQRLTCFAESLNLPFSYKAVIVKDLAEIKLDDFDVDDDEAVAVYSPYFLRTLISRLSCLENLMLVIRNIKPSIMIMLEIDSNHNSPSFVNRFIETLFFYSAFFDCIETCLQEDGESRMTVETVCSSGIRNIVAAEGTERTVRNVKLDVWRRFFARYRMVETGFSESSLYQANLVAREFNFGKFCSVDKNGKSLIVSWKGTPTHSLSAWRFLSLLFPRDMGIEPLPFSFSGFQGGCGSSKQSFSAIMELDGGDNLFKDQNQQHEHVHDDDDDVKVGGMILEDVNFAPDGDALQAPSSSAIASLDLLKNYGSKFKKLSGESASSENQRLSTEEIMRVAGARYVHYSAHWNNDDFRVPMHPYGFDLGNLSEEENRDVELAQFLLAAAERVGCQQFERASRLLLHCQWNSDVNANAAQRVIFHFAEALRERISRETGKAEVGISSSNDDNNQNQNQNQNQNQETEMIQKMSFNVSLKCHQKMPFNQVMQFTGVQTMVEHLACETKIHLIDLDIRSGVQCTALMQALVERKVRCVKSLKVSAIGTCAYKNKIADTGKRLTSFAESLNLPFSYKAVIVTDLEEIKLDDFDLDGNEAVAVYSSYFLRTLISRPNCLENLMLVIRNIKPCIMIVMETESNHNSPSFVNRFIDTLFFFSAFFDCIETCLQEDSESRMAVETVCSVGIRNIVAAEGTERTIRNVKLDVWRRFFARYRMVETGFSESSLYQANLVAKEFNFGKFCSVDKNGKSLIVSWKGTPMHSLSAWRFV 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90903g00013 1129 ProSiteProfiles GRAS family profile. 193 577 IPR005202 -
Stsc90903g00013 1129 MobiDBLite consensus disorder prediction 802 825 - -
Stsc90903g00013 1129 MobiDBLite consensus disorder prediction 47 66 - -
Stsc90903g00013 1129 ProSiteProfiles GRAS family profile. 735 1127 IPR005202 -
Stsc90903g00013 1129 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 158 566 IPR005202 -
Stsc90903g00013 1129 MobiDBLite consensus disorder prediction 46 66 - -
Stsc90903g00013 1129 MobiDBLite consensus disorder prediction 803 825 - -
Stsc90903g00013 1129 Pfam GRAS domain family 745 1127 IPR005202 -
Stsc90903g00013 1129 Pfam GRAS domain family 203 577 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90903g00013 Stsc-Chr90903 41078 45964 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90903g00013 195 578 GRAS Transcription Factor Family AT2G01570 28.608 1.07e-44 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc90903g00013 GRAS 5.4e-74 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90903g00013 - - ahf:112695737 907.516