Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90903g00012 ATGAATTCTTCATGGTTATGTTCTTCAGCTCCAAGGGAAGTGTTCTACCTCATCACCGTGACACTCCTGACACTCCTTTTACCCCTCTCCTTCCTCCTTCTATCGAGGCTCTCAACTCTTCAATACTACCTCCAAACCCTCACTTTCTACTACCACCATTATTCACCGCCCTATCTTCTTTCCCTTGCACTTCGTATTAGTCCTTCTCTTCTTTACATTCTTGTCTCCATTCTCACTCTTGCATCCTTCATCCATGCCTTCACCGGTAACATCACCATATTCACACGTTCCTCGTCTTCTTCTTCTTCTTTTCAGCCTCGTCTCTACACCGCTTGGATTCTCCTTTGCGCGTTCCAAGTTTGTGTTGGCTTAGGCATTGAAGGAAGCATTCAGGCTGGTTTTTACGATGACGACGAAGACGAAGGCGGGTTTGAGAGGAGTCTCTTGAGCAGGGTGGTGTTTCTCTTGGGGCTGCACGAGACAACACATGTTTGGTCCAAGATGGTGGTGAGGCCGGTGGTGGATGACACGGTGTTCGGGGGGGTGGGACCAAGAAAGGAGAGATGGGTTGAGAGGGCGGTGATGGCGGCGAGCCTAGGAACCTTGTGGTGGTGGAAACTTAGAGAGGATGTAGAGACATTGGTGATGATGGTTGAGGTAAAGAAGGAACAGTTTATGGATGTTGGAATCGGTGATTTTATTGGATGGTGTTTGTATTATGTCACTGTCACAATTGGGATCATTAAGATTGTCAAGGCTCTTATGTGGATCTGCATGATTTCCCTCTGTAGAATAAGAAGAAGAACAACAAGCATTTCCATGGTGGAAACTAGTGAAGACAATGGCGGCAAGAGTAACACTCTCCTCGATGCTTATCTAGCTAATAACATTGTCCTCACTGTAAACTGCTCAGCTCTCTCTTCTTTTCCGATTCGGTTGCGACGTGACATGGAGATTAATGAGCCTCTTTCCTCCACACCATTCAATTTCGCTGGATTCCAAGGCGGTTATCGTTCTTTTAATATTCAACATGAGGAGGTTGTGTTACAACAGAAGCAAAGTTTCTCAGCAATAATGGAGTTAGATGGAGGAGATAATTTGTTCAATGATCAAACCCAGCAGCATCACCAACATGATCATGATCATGATGATAATGTCAAAGTTGATGGCATGATCTTAGAAGATGTCAATTTTGCCCCTGATGGTGATGCTCTTCAACCAATTTCACAAGAGTTTCAAGCACCATCATCTTTGGCAATAGCATCATCATTGGAGCTATTAACAAACTACGGAAGCAAGTTCAAGAAGCTGAGTGGGGAAAACATAAGCGACAACTTCAGCAGCATCATTATTGAGAGTAGTACTTGTTCGGAGAATCAAAGATTGTCAACTGAAGAAATCATGAGAGTTGCAGGGGCAAGGTATGTGCATTACTCTGCACATTGGAATAATGATGATTTCAGCATCCCCACGCACCATTATGGATTGGATATTGGAAACTTGTCCGAACAAGAGAATAGAGATGTGGAGCTTGCTCAGTTTCTCCTAGCTGCTGCCGAGAGGGTAGGGTGCCATCAATTCGAACGCGCCAGCCGCTTACTCCTCCATTGCCAATGGAAATCAGATGTCAATGCAAACGCTGCTCAGAGAGTTATCTTTCATTTCGCAGAAGCCCTTCGAGAAAGGATCAATAAAGAAACTGGAAGGACAGAAGTAGGAATAACGTCTTCATGTTATGATAATCAGAATCAAGAAACTGAAATGCTTCAAAAGATGAGTATCAATGGATCCCTTAATTGTCATCAGAAAATGCCTTTCAACCAAGTAATGCAATTCACTGGTGTACAAACTATGGTGGAACATCTTGCTTCTGAGACCAAGATACACCTCATTGATCTTGATATCAAAAGCGGAGCGCAATGTACGGCTTTGATGCAAGCGCTGGTTGAACGGAAAGAGTGTTGTGTGGAGTCTCTAAAGGTATCTGCCATTGGAACTAGCTCTTACAAGAACAAGATTGAAGATACAGGACAAAGGTTAACATGTTTTGCTGAATCACTGAACTTACCGTTTTCATATAAGGCAGTTATTGTATCAGATTTAGCAGAAATCAAGTTGGATGATTTTGATGTGGATGATGATGAAGCCGTTGCTGTGTACGCTCCTTATTTTCTGAGGACTCTGATATCAAGGCCTAATTGCTTGGAAAATTTGATGCTAGTTATAAGGAATATCAAGCCCTGTATTATGATAGTGCTGGAAATAGACTCAAATCATAACTCGCCTTCTTTTGTGAACCGATTCATCGGAACGTTGTTCTTCTGTTCAGCATTCTTTGATTGTATTGAAACTTGTATGCAAGAAGATAGTGAGAGCAGAGTGGCAGTTGAAACAGTGTGTTCCGTTGGAATAAGAAACATTGTTGCTGCTGAAGGCACAGAAAGGACAGTTAGGAATGTGAAGTTAGATGTTTGGAGAAGGTTCTTCGCAAGGTATCGAATGGAGGAAACAGGGTTTAGTGAATCGTCGCTTTACCAAGCTAACTTGGTTGCTAGAGAGTTTTGTTTTAGCAAATTCTGCAGTGTGGACAAAGATGGTAAGAGTCTAATAATTTCATGGAAGGGAACTCCAATGCATTCACTCTCAGCTTGGAGGTTTGTATGA 2664 0.4283 MNSSWLCSSAPREVFYLITVTLLTLLLPLSFLLLSRLSTLQYYLQTLTFYYHHYSPPYLLSLALRISPSLLYILVSILTLASFIHAFTGNITIFTRSSSSSSSFQPRLYTAWILLCAFQVCVGLGIEGSIQAGFYDDDEDEGGFERSLLSRVVFLLGLHETTHVWSKMVVRPVVDDTVFGGVGPRKERWVERAVMAASLGTLWWWKLREDVETLVMMVEVKKEQFMDVGIGDFIGWCLYYVTVTIGIIKIVKALMWICMISLCRIRRRTTSISMVETSEDNGGKSNTLLDAYLANNIVLTVNCSALSSFPIRLRRDMEINEPLSSTPFNFAGFQGGYRSFNIQHEEVVLQQKQSFSAIMELDGGDNLFNDQTQQHHQHDHDHDDNVKVDGMILEDVNFAPDGDALQPISQEFQAPSSLAIASSLELLTNYGSKFKKLSGENISDNFSSIIIESSTCSENQRLSTEEIMRVAGARYVHYSAHWNNDDFSIPTHHYGLDIGNLSEQENRDVELAQFLLAAAERVGCHQFERASRLLLHCQWKSDVNANAAQRVIFHFAEALRERINKETGRTEVGITSSCYDNQNQETEMLQKMSINGSLNCHQKMPFNQVMQFTGVQTMVEHLASETKIHLIDLDIKSGAQCTALMQALVERKECCVESLKVSAIGTSSYKNKIEDTGQRLTCFAESLNLPFSYKAVIVSDLAEIKLDDFDVDDDEAVAVYAPYFLRTLISRPNCLENLMLVIRNIKPCIMIVLEIDSNHNSPSFVNRFIGTLFFCSAFFDCIETCMQEDSESRVAVETVCSVGIRNIVAAEGTERTVRNVKLDVWRRFFARYRMEETGFSESSLYQANLVAREFCFSKFCSVDKDGKSLIISWKGTPMHSLSAWRFV 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90903g00012 887 PANTHER TRANSMEMBRANE PROTEIN 9 279 - -
Stsc90903g00012 887 ProSiteProfiles GRAS family profile. 502 885 IPR005202 -
Stsc90903g00012 887 Pfam GRAS domain family 512 885 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90903g00012 Stsc-Chr90903 34896 39231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90903g00012 501 886 GRAS Transcription Factor Family AT1G66350 28.424 1.55e-43 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc90903g00012 GRAS 3.9e-75 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90903g00012 - - ahf:112695737 863.603