Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90903g00011 ATGAAGGGCTACCTTCAGATTTTTGGTCTTGGAGGAAATATGGACAAAAGCCAATCAAAGGATCTCCATATCCAAGTGTGCAGGGGTTATTACAGATGCAGCACATCAAAGGGGTGTTCAGCAAAGAAGCAAGTAGAGAGATGCAGAACAGATGCCTCAATGCTCATAATCACATATTCCTCTACACATAATCACCCTTCTCCTGATGAAATAATCTCCACTGCAAATTTATCACAAAAACCAAAAGAACAAGAAACCACGGAAGAAGACCTCTCAAAGGTGGAAGAACAAGAACATGAACATGTTGAAGAAGAAAACAAGGATCATGACAAGGCTAGTAGTATTACAGCTGATGAGAAGAGTGAGAAGAGTTTCCATTACTTGCAATCTCCAATAGGCAGCAGCCATGAAGAGATTACTGTTACAGATCAAGAAGATCCATTCAAGCTAATAAGCACTGATGAGAAAAGCAATGAAAGAATAGATGTTTTGTTAGAAGAGGAAGAGCCAGTATGCTATGCACAGATCAAGAACTTGACAACAACAGCAAAATCAGAAGAACTTGATTTCTTCGATGAGCTTGAGGAGTTGCCCATGTCTTCATCTTTCTTGCACTTCACGAGGAGCATTTTATCCGATGAAAGGATTCCCGTTTCTCCTTCTTGA 666 0.4009 MKGYLQIFGLGGNMDKSQSKDLHIQVCRGYYRCSTSKGCSAKKQVERCRTDASMLIITYSSTHNHPSPDEIISTANLSQKPKEQETTEEDLSKVEEQEHEHVEEENKDHDKASSITADEKSEKSFHYLQSPIGSSHEEITVTDQEDPFKLISTDEKSNERIDVLLEEEEPVCYAQIKNLTTTAKSEELDFFDELEELPMSSSFLHFTRSILSDERIPVSPS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90903g00011 221 Pfam WRKY DNA -binding domain 25 66 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90903g00011 221 SMART WRKY_cls 19 67 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90903g00011 221 MobiDBLite consensus disorder prediction 82 125 - -
Stsc90903g00011 221 MobiDBLite consensus disorder prediction 60 125 - -
Stsc90903g00011 221 Gene3D WRKY domain 16 69 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc90903g00011 221 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 28 202 IPR044810 GO:0003700
Stsc90903g00011 221 SUPERFAMILY WRKY DNA-binding domain 25 68 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc90903g00011 221 MobiDBLite consensus disorder prediction 60 81 - -
Stsc90903g00011 221 ProSiteProfiles WRKY domain profile. 28 68 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90903g00011 Stsc-Chr90903 30524 32339 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90903g00011 28 94 WRKY Transcription Factor Family AT4G01250 52.941 2.58e-18 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc90903g00011 WRKY 8.7e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90903g00011 - - adu:107492378 278.87