Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90903g00002 ATGTCGAAGAGGAAGTTCGGATTCGACGGTTTCGGCATAAACCGTCAATCAACCTACAACTTCGAGCGATCCCAAGCTCCTCAGCGCCTCTACGTCCCTCCCTCCTCACGCCACGGCCACGACAATTACGAGGACACCGACCTCGACAACATCGATTACGACGACAATGACGCCGCCGGAACCGAAAACAAAGCTGCTGGTCACGGAGGCGGTGGCAATAATGGTGGCGAAGAGGAAATCGATCCGCTGGACGCCTTCATGGAAGGGATTCACGAAGAGATGAAGGCGGCGGCGCCTCCGAAGCCGAAGGGGAAGGCGGAGGATAGGTACAAGGATGATGAGGAGGATGATCCAATGGAGAGCTTCTTGAGGGCGAAGAAGGACCTAGGGTTGACGCTGGCCTCGGAGGCTCTGCACGCCGGCTACGATTCTGATGAAGAGGTTTATGCTGCTGCTAAGGCTGTGGATGCTGGTATGGTAGAGTATGATTCTGATGATAATCCTATCATTCTTGACAAGAAGAAGATCGAACCCATACCTGCACTTGATCACAGTTCTATTGATTATGAGCCCTTCAATAAGGATTTCTATGAGGAGGCACCCTCAATTTCAGGTATGAGTGAGCAAGATGTCACTGAATACCAGAAGAGTTTGGCTATTCGTGTGTCGGGATTTGATGTGCCTAAGCCAATAAAGACATTTGAGGACTGTGGGTTCTCTCAGCAAATTATGGGTGCCATAAAGAAACAAGGTTATGAGAAGCCAACGTCTATACAGTGCCAATCTTTACCTGTTATTCTTTCTGGTAGAGATATCATTGGCATTGCAAAAACCGGTTCTGGTAAAACTGCTGCTTTTGTTCTTCCTATGATTGTGCATATCATGGACCAGCCTGAACTTCAGAAGGAGGAGGGTCCTATAGGAGTTATATGTGCACCTACAAGAGAATTGGCACATCAGATATATCTGGAGTCCAAGAAATTTGCAAAAGCATATGGTATACGTGTGTCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTCAAGGCAGGTTGTGAGATAGTAGTTGCCACCCCAGGGAGATTGATAGACATGCTAAAAATGAAGGCATTGACAATGACTAGAGCAACTTACCTGGTGCTTGATGAGGCTGATCGGATGTTTGATCTTGGATTTGAGCCACAAGTAAGGTCCATTGTTGGTCAGATTAGGCCGGACCGTCAGACTTTACTTTTTTCTGCAACAATGCCTCGTAAAGTTGAAAAATTGGCTAGAGAGATCCTTAGTGATCCTATTAGAGTAACAGTTGGGGAGGTGGGAATGGCAAATGAAGACATTACTCAAGTTGTCCATGTAATTCCTTCTGATGCTGAAAAATTGCCTTGGCTTTTGGAGAAGTTGCCTGAGATGATTGATCAAGGTGATGTCCTTGTATTTGCATCCAAGAAGGCTACTGTGGATGAAATTGAATCACAATTGGCTCAGAAAGGCTTTAAAGTTGCTGCCCTGCACGGTGATAAAGATCAAGCTTCTCGTATGGAAATTTTGCAGAAGTTTAAAGCTGGTATCTACCATGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTCGATATCAAGTCAATTAAGTCTGTGGTAAACTTTGACATTGCAAAAGATATGGACATGCATGTCCATCGCATTGGGAGAACAGGGCGTGCTGGTGACAAGGATGGGGTTGCATACACTCTTATAACTCAAAAAGAAGCACGGTTCGCTGGCGAATTGGTTAATAGCTTGATTGCTGCTGGTCAGAATGTATCCATGGAGTTGATGGATCTTGCTATGAAGGATGGGAGGTTCAGGTCAAAACGTGATGCAAGAAAAGGAGGTGGGAAAAAAGGCAAAGGGAGAGGTGGTGGTGGCGGTGGTGGTGGTGGTGGCGGTGGTGGGCGGGGTGTGCGTGGAGTTGATTTTGGCCTTGGTATTGGGTATAATCCCGAGTCCAACAACGCGTCATCTAACATGACTCCAAGCCGCTCAGCCGCTGTAAATTCTCTACGAACAGGAATGATGTCACAGTTTCGGAGTAGCTTTGTCGCTGCCTCCTCGAACTCCCCAAGTCAAGGATACAATAGCAATACAAGTATGGTTGCAAATAAGAGACCTGCACTTCGTGGTTTTGTATCTGGTGGATCAATTGGTGGGGATATAAATCCTCATAATAATGCTGCTTCACCCAGTCCTGCAACATCAACAGTAAACTCCACTGGTCAAAATTCTGGTGTAAACCCTGCTCAGAACAATTCAAACAGCTCTAAACCCAGAGAAAGGAGGAGGGCATCAGGCTGGGATAGGTAG 2352 0.4643 MSKRKFGFDGFGINRQSTYNFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIDYDDNDAAGTENKAAGHGGGGNNGGEEEIDPLDAFMEGIHEEMKAAAPPKPKGKAEDRYKDDEEDDPMESFLRAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMVEYDSDDNPIILDKKKIEPIPALDHSSIDYEPFNKDFYEEAPSISGMSEQDVTEYQKSLAIRVSGFDVPKPIKTFEDCGFSQQIMGAIKKQGYEKPTSIQCQSLPVILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLESKKFAKAYGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMTRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPIRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPEMIDQGDVLVFASKKATVDEIESQLAQKGFKVAALHGDKDQASRMEILQKFKAGIYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGKKGKGRGGGGGGGGGGGGGRGVRGVDFGLGIGYNPESNNASSNMTPSRSAAVNSLRTGMMSQFRSSFVAASSNSPSQGYNSNTSMVANKRPALRGFVSGGSIGGDINPHNNAASPSPATSTVNSTGQNSGVNPAQNNSNSSKPRERRRASGWDR 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90903g00002 783 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 200 612 - -
Stsc90903g00002 783 SMART helicmild6 491 572 IPR001650 -
Stsc90903g00002 783 MobiDBLite consensus disorder prediction 733 769 - -
Stsc90903g00002 783 SMART ultradead3 251 453 IPR014001 -
Stsc90903g00002 783 Gene3D - 195 439 IPR027417 -
Stsc90903g00002 783 CDD DEADc_DDX42 243 439 - -
Stsc90903g00002 783 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 441 IPR027417 -
Stsc90903g00002 783 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 384 392 IPR000629 -
Stsc90903g00002 783 MobiDBLite consensus disorder prediction 727 783 - -
Stsc90903g00002 783 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 610 IPR027417 -
Stsc90903g00002 783 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 232 260 IPR014014 GO:0003724
Stsc90903g00002 783 MobiDBLite consensus disorder prediction 13 31 - -
Stsc90903g00002 783 CDD SF2_C_DEAD 450 582 - -
Stsc90903g00002 783 Gene3D - 440 616 IPR027417 -
Stsc90903g00002 783 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 463 612 IPR001650 -
Stsc90903g00002 783 MobiDBLite consensus disorder prediction 617 650 - -
Stsc90903g00002 783 MobiDBLite consensus disorder prediction 1 80 - -
Stsc90903g00002 783 FunFam probable ATP-dependent RNA helicase DDX17 194 441 - -
Stsc90903g00002 783 MobiDBLite consensus disorder prediction 93 117 - -
Stsc90903g00002 783 Pfam DEAD/DEAH box helicase 256 427 IPR011545 GO:0003676|GO:0005524
Stsc90903g00002 783 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 263 438 IPR014001 -
Stsc90903g00002 783 Pfam Helicase conserved C-terminal domain 468 572 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90903g00002 Stsc-Chr90903 1759 5783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90903g00002 232 588 Eukaryotic Initiation Factors Gene Family AT3G13920 34.722 1.05e-61 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90903g00002 K12835 - gmx:100814854 1300.8