Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90900g00009 ATGGTAGTGGTAGATCAGCACCAGCATCACAACAACCACCATGGATCTTCCTTAGTGATCAAAAGGATCAAGAGGGAGCAATGCACCCACACCAAACATGATATTAACTTCACCAAATGGAAGATTTTGATTGGTGCTACTGATTGGGAAGATCATTCAAAGGGAAAAGAAGGATGTTTAAAATACAGGATCCATAATCTGCCAGAAAAATCATGTCCAGGAGTATATGAGCTTGGAATAGCTGCGTCATCAAGCAGTGGTTTGGGGAGGGGAATTTACAAACTTGCCCCTGAGCGTATAGTTGTGGCTTACCTTGGTGAAACTGATAATATAAGGGAAAGGTTGCAACACTATGGAAGGGATGGATCTCATTTGCACAGTAACACCTCTGATGAATATTCAAGTTATGATTCTCTTCAAAAGAAGAGCCCATTGTTTGAGGAGATTTTTTCACTGGGCTACTCCATTGTTTATAGATGGGCTCCTATGAATAGCAAAGAAGAGGCCAAGTTAATAGAAGTTCAGCTGCTCAAAACATTTGATTATGCATGGAACACAACCTATAATGGTCACCCGCGGCCCAACGATATTCTTCAAAAGCTAAACAAGATTTCTTCCAGCACAAGAACAATCTCAGATATGGTCAGGGAGCTCTTACCTTTCCCTCGAAAACAAGTCGGTATCCGAATCAAATCAAGCAAGCTTCCTAAACAAGAGGAAGAAGAAGATAACGATGGCAGCTACAGTTTCTTACCTAAGGTGTTCAAATTCAACAAATCTCGTCCTAGGAAAGTCGAAAATATCGCCAGTGCCAGCCAGGAGAATGCTATAATTTGTGGGGTGGCTTTAGGTGATGGTTCTGTTTGTACAAATGCACCAGTAGAAAGAAGAAAGAGGTGTCTTCAACACAAAGGAATGAGAATTAATAATGTATCTGCTGCCAAAGCATTAGTTTCACCAAAATCAAAGAGCATTTTGGTTTCAGAAATCAATGAGTTTTATGGATCAAAATGCTAG 1017 0.4041 MVVVDQHQHHNNHHGSSLVIKRIKREQCTHTKHDINFTKWKILIGATDWEDHSKGKEGCLKYRIHNLPEKSCPGVYELGIAASSSSGLGRGIYKLAPERIVVAYLGETDNIRERLQHYGRDGSHLHSNTSDEYSSYDSLQKKSPLFEEIFSLGYSIVYRWAPMNSKEEAKLIEVQLLKTFDYAWNTTYNGHPRPNDILQKLNKISSSTRTISDMVRELLPFPRKQVGIRIKSSKLPKQEEEEDNDGSYSFLPKVFKFNKSRPRKVENIASASQENAIICGVALGDGSVCTNAPVERRKRCLQHKGMRINNVSAAKALVSPKSKSILVSEINEFYGSKC 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90900g00009 338 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 17 323 IPR038909 GO:0003677|GO:0006355
Stsc90900g00009 338 SMART uri_9 89 190 IPR000305 -
Stsc90900g00009 338 Pfam GIY-YIG domain-containing protein 37 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90900g00009 Stsc-Chr90900 55890 57882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90900g00009 17 323 HRT Transcription Factor Family AT5G56780 44.164 1.39e-81 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Stsc90900g00009 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90900g00009 - - adu:107490117 498.819