Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90896g00001 ATGGGAAGAGAAGCCCCCAAGCAGCAGCAGCAGCAGCAGCCGCCGGTTGCATACACAGTGGAGCAGCTTGTTGCGGTAAATCGATATAATCCCGATATTCTTCCCGATCTCGAAAACTATGTCAATGAACAGGTTTCATCGCAAACCTACAGCCTCGACGCAAATCTCTGCCTTCTTCGCCTCTACCAGTTTGAACCGGAGAAAATGAGTTCTCAGATTGTTGCCCGCATTTTGGTTAAGGCTCTTATGGCAATGCCAGCTCCAGATTTCAGCCTGTGTCTCTTTTTGATTCCTGAGCGTGTGCAAATGGAGGAGCAATTTAAGACACTGATTGTTCTCTCACACTATTTGGAGACAGGAAGGTTTCGTCAGTTCTGGGATGAAGCAGCAAAAAATCGTCATATAGTTGAAGCCGTTCCAGGATTTGAGCAGGCTGTCCAAGGCTATGCTATTCACGTCCTATCCTTGACTTACCAAAAGGTTCCTAGAGCTGTGCTTGCTGAGGCAATCAACATAGAAGGTTTATCCTTGGACAAATTCCTCGAACACCAAGTAGCTAACTATGGTTGGGCAATAGAGAAGACCCAAGGCAAGGGTCAGCTCATTGTTCTTCCCAAAAATGAATTTAATGACCCAGTTTTGAAGAAAAACACCTCAGATAGTGTACCATTGGAGCACATTACTCGCATCTTTCCCATTCTTAGTTGA 708 0.4548 MGREAPKQQQQQQPPVAYTVEQLVAVNRYNPDILPDLENYVNEQVSSQTYSLDANLCLLRLYQFEPEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQFWDEAAKNRHIVEAVPGFEQAVQGYAIHVLSLTYQKVPRAVLAEAINIEGLSLDKFLEHQVANYGWAIEKTQGKGQLIVLPKNEFNDPVLKKNTSDSVPLEHITRIFPILS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90896g00001 235 SUPERFAMILY "Winged helix" DNA-binding domain 140 232 IPR036390 -
Stsc90896g00001 235 SUPERFAMILY ARM repeat 17 138 IPR016024 -
Stsc90896g00001 235 Pfam CSN8/PSMD8/EIF3K family 70 197 IPR033464 -
Stsc90896g00001 235 FunFam Eukaryotic translation initiation factor 3 subunit K 131 234 - -
Stsc90896g00001 235 ProSiteProfiles PCI domain profile. 50 209 IPR000717 -
Stsc90896g00001 235 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 6 232 IPR009374 GO:0003743|GO:0005737|GO:0005852
Stsc90896g00001 235 Gene3D - 131 234 IPR036388 -
Stsc90896g00001 235 FunFam Eukaryotic translation initiation factor 3 subunit K 9 128 - -
Stsc90896g00001 235 Hamap Eukaryotic translation initiation factor 3 subunit K [EIF3K]. 11 235 IPR009374 GO:0003743|GO:0005737|GO:0005852
Stsc90896g00001 235 Gene3D ARM repeat; domain 1 12 128 IPR016020 GO:0003743|GO:0005852|GO:0006446|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90896g00001 Stsc-Chr90896 10146 12346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90896g00001 1 235 Eukaryotic Initiation Factors Gene Family AT4G33250 74.894 2.74e-128 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90896g00001 K15028 - tcc:18588218 414.461