Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90893g00007 ATGGATGAGAAAGTTAAGAAGTCAAAGACTGAAGAAATCTGTTTCGAGCAAAATGACAGGAAGAAGGAGAAGCATATGAAGAAAAAGAAAATTCATGAAAATGATAAAACACGCAATTCAGATAAAATTCTTGAGGCAAATTTTATTGATGCTGCTGCTGATAGACAGGCTTGTTCCAATGATGCAAAATTTACGGGGAATAGGGAAGAAGATGGAAACATCAGTAAGAAATTGAAGAAAAAAGGGACAAAGGATGCTGAAGCGGTATGTAATGCAATTCGCGATGATAAAGTATTGCAGGGAATGGGTGACAACCAAAAATGCAAGAAGAAGAGAAAAAATTGCAGTGATTCATTAACTGGAATGCAGGAAATGGGTTCTTCCATACCAAATAAAAAAGGAAAAGTTAATGGGGATCACGACTTACAGGACCATGTGGGTGGTCCTCCTTTGGACAGAATCAGTACTGGAGATGCTAATGCACATTCTCTTGTCAATGAAGTTGATGATCAAGGTAAGAAGATGGAGAAGAAGAAGAAGAAAAATAAGAAGGAGGAGAAGGAGCTGAGTGAAAAAGGTGATCATTCTGTTGTTCCTAATGACCAGCAAGACAAAGAGACAGAGAAGGTAATAAGCAAGAAAGTGAAAAGGGTTGAAGAAGATTCCAAAACCAATAAAGGTGATACTGAAAGTGTTGTAGCTGATATTTCTTTGCTCAAAAGCCATGAAGGTGAAGATCATCAAGGCAAGAAGATGAAGAAGAAATTGAGCAATAAAGGCAAAAGTAAGGAGAAAAGTAAGTTTAAAGGCAATGAAGATGATCAACATTGCGCCAAAGGCAACGAAGGTGAAGACGATAGCCTAGGCAAGCAAAGGAAGAAGAAATTGAGCAATAAAAGCAAAAGTAAGGAGAAAAGTGAGTTTAAAAGCAACGAAGATGATCAGCATTGTGAGAACAGCAATGAAGGTGACAATGATAACCTGGGCAAGACGATGAAGAAGGGTAAACAGAGTGAAGAAAGCACAAGTAAGGAGAGCAATGAAGTTAATGATCAAGGAAAGAAGACAAAGATAAACAAAAAAACAAAGGAAGGCACCACATCCAAACCCAAGCGAGTAACATTTTCTGATGAAGTGGAGGTCTGCTGTGATGGCTTAATACGTGGGAAGTGGTATACACCTGAAGAAGATGAAAAAATTAAACAGGCTGTTTTCGACTATATAGAGTCTCACCAATTGGGGGATGAAGGTGTTGATATGGTTATTAATTCTAGAACTCATCCTGAACTTAAAAATTGTTGGAAGGAAATTGGAGCAGCCTTGTCCTATAGGCCTTACAAAAGTGTATATAAACGTGCTCAAATTTTGTTTACAAGGGATGAGAAACGCAAATGGACTCCTGAAGAGATTGAGTTTTTAAAGAAGATGGCTGTACAACATGGATCTGATTGGAAATCAATAGCTGACGCAATGGGTAAAAATCGAGTTCATGTGAAGGATGCATGGCGTAGAAATAAAAGGACCGCAAAGACAGGACCATGGTCTCAGGATGAGTATCAAAAGATATTTGATTTGGTAAGCCTGGACCTACGTGCAAGGGCTTTAGAAGACACTAGGAAAAAAAGGCATGGTATGTTGCGAGATAATATTGGTTGGGAGGCAATTGGTGACAAATTGGGAACTAGAAGGAATGCAGATGTTTGCAGAAAGTGGTATTCCCAACTAACATCTCCTATGGTTCAGCAAGGTCAATGGAGTGATACTGATGACTACCGCTTGGTAGATGCCTTATTTGCCTTGGATGCTTGCAGCATGGATGAGGTAGACTGGGACAATTTGCTTGAGCACAGGGACGGTGAGCTATGCAGAAAAAGATGGAATCAAATGGTTCGACATATTGGAGAGCATGGGAGAAAATCATTCACTGAGCAGGTGGAAATTCTTGCAAAAAGATATTGCCCTGATTTATTGGAAGCAAGAGAAGCCTTTGATAGCAAACCCGTTGTTTGTTGA 2013 0.3934 MDEKVKKSKTEEICFEQNDRKKEKHMKKKKIHENDKTRNSDKILEANFIDAAADRQACSNDAKFTGNREEDGNISKKLKKKGTKDAEAVCNAIRDDKVLQGMGDNQKCKKKRKNCSDSLTGMQEMGSSIPNKKGKVNGDHDLQDHVGGPPLDRISTGDANAHSLVNEVDDQGKKMEKKKKKNKKEEKELSEKGDHSVVPNDQQDKETEKVISKKVKRVEEDSKTNKGDTESVVADISLLKSHEGEDHQGKKMKKKLSNKGKSKEKSKFKGNEDDQHCAKGNEGEDDSLGKQRKKKLSNKSKSKEKSEFKSNEDDQHCENSNEGDNDNLGKTMKKGKQSEESTSKESNEVNDQGKKTKINKKTKEGTTSKPKRVTFSDEVEVCCDGLIRGKWYTPEEDEKIKQAVFDYIESHQLGDEGVDMVINSRTHPELKNCWKEIGAALSYRPYKSVYKRAQILFTRDEKRKWTPEEIEFLKKMAVQHGSDWKSIADAMGKNRVHVKDAWRRNKRTAKTGPWSQDEYQKIFDLVSLDLRARALEDTRKKRHGMLRDNIGWEAIGDKLGTRRNADVCRKWYSQLTSPMVQQGQWSDTDDYRLVDALFALDACSMDEVDWDNLLEHRDGELCRKRWNQMVRHIGEHGRKSFTEQVEILAKRYCPDLLEAREAFDSKPVVC 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90893g00007 670 Coils Coil 168 192 - -
Stsc90893g00007 670 PANTHER GB|AAC33480.1 3 669 - -
Stsc90893g00007 670 Gene3D - 466 504 - -
Stsc90893g00007 670 SUPERFAMILY Homeodomain-like 557 636 IPR009057 -
Stsc90893g00007 670 MobiDBLite consensus disorder prediction 167 228 - -
Stsc90893g00007 670 MobiDBLite consensus disorder prediction 17 38 - -
Stsc90893g00007 670 MobiDBLite consensus disorder prediction 64 84 - -
Stsc90893g00007 670 MobiDBLite consensus disorder prediction 263 293 - -
Stsc90893g00007 670 Pfam Myb-like DNA-binding domain 465 521 - -
Stsc90893g00007 670 SMART sant 461 508 IPR001005 -
Stsc90893g00007 670 SMART sant 510 578 IPR001005 -
Stsc90893g00007 670 SMART sant 388 459 IPR001005 -
Stsc90893g00007 670 CDD SANT 464 506 IPR001005 -
Stsc90893g00007 670 ProSiteProfiles Myb-like domain profile. 577 630 IPR001005 -
Stsc90893g00007 670 SUPERFAMILY Homeodomain-like 462 518 IPR009057 -
Stsc90893g00007 670 MobiDBLite consensus disorder prediction 63 84 - -
Stsc90893g00007 670 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 462 510 IPR017930 -
Stsc90893g00007 670 Gene3D - 505 579 - -
Stsc90893g00007 670 MobiDBLite consensus disorder prediction 104 369 - -
Stsc90893g00007 670 ProSiteProfiles Myb-like domain profile. 457 506 IPR001005 -
Stsc90893g00007 670 MobiDBLite consensus disorder prediction 300 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90893g00007 Stsc-Chr90893 32306 35488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90893g00007 434 632 MYB-Related Transcription Factor Family AT3G18100 23.645 1.48e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc90893g00007 Myb_DNA-bind_6 3.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90893g00007 - - adu:107465053 951.044