Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90893g00002 ATGTTAGTTTTGAGTATATTAACCACACATCTTAGAGTTGCATCCGCATCATCATCATGGCAACAAGCTCATGCAACATTCTATGGTGGAAGTGATGCCTCAGATACAATGGGTGGAGCATGTGGGTATGGAAATCTATACAGAGATGGTTATGGAGTTAAAACAGCTGCACTGAGCACTGCTTTGTTCAACGATGGCAAAGCATGTGGTGGTTGCTATCAGATAGTCTGTGATGCAAAAAAAGTGCCCCAATGGTGCCTAAAGGGCACTTCCATCACAATTACTGCCACAAATTTCTGTCCTCCAAACTATGACCTCCCCAGTGACGATGGTGGTTGGTGCAATCCTCCAAGGCCTCACTTTGACATGTCTCAACCTGCCTTTGAGAAGATTGCCAAGTACAAGGCCGGAATAGTTCCTATTTTGTACAGAAAGGTTACGTGCATCAAAACTGGAGGAATTAGATTCACCATCAATGGAAAAGACTATTTTGAGCTGGTGCTGATAAGCAACGTGGGTGGGGCAGGGGATATCTCCAAAGTTTGGATCAAAGGGTCCAACATGACCAACTGGGAAACCATGTCAAGGAATTGGGGCTCTAACTGGCAAAGCTTGAGCTACCTCAATGGCCAGAGCTTGTCATTCAAAATCCAACTCAGCGATGGAAAGACTCGCACCGCGTCCGATCTGGTACCATCCAATTGGAAATTTGGCCAGTCCTTCACCAGCAATATTCAGTTCTGA 744 0.4543 MLVLSILTTHLRVASASSSWQQAHATFYGGSDASDTMGGACGYGNLYRDGYGVKTAALSTALFNDGKACGGCYQIVCDAKKVPQWCLKGTSITITATNFCPPNYDLPSDDGGWCNPPRPHFDMSQPAFEKIAKYKAGIVPILYRKVTCIKTGGIRFTINGKDYFELVLISNVGGAGDISKVWIKGSNMTNWETMSRNWGSNWQSLSYLNGQSLSFKIQLSDGKTRTASDLVPSNWKFGQSFTSNIQF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90893g00002 247 CDD DPBB_EXPA_N 20 148 - -
Stsc90893g00002 247 FunFam Expansin 153 247 - -
Stsc90893g00002 247 Gene3D - 5 148 IPR036908 -
Stsc90893g00002 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 153 IPR007112 -
Stsc90893g00002 247 Pfam Expansin C-terminal domain 154 232 IPR007117 -
Stsc90893g00002 247 Gene3D - 153 247 IPR036749 -
Stsc90893g00002 247 SUPERFAMILY PHL pollen allergen 150 243 IPR036749 -
Stsc90893g00002 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 243 IPR007117 -
Stsc90893g00002 247 PANTHER EXPANSIN-A15 9 244 IPR002963 GO:0009664
Stsc90893g00002 247 PRINTS Expansin signature 92 102 IPR002963 GO:0009664
Stsc90893g00002 247 PRINTS Expansin signature 200 221 IPR002963 GO:0009664
Stsc90893g00002 247 PRINTS Expansin signature 128 141 IPR002963 GO:0009664
Stsc90893g00002 247 PRINTS Expansin signature 229 245 IPR002963 GO:0009664
Stsc90893g00002 247 PRINTS Expansin signature 79 90 IPR002963 GO:0009664
Stsc90893g00002 247 PRINTS Expansin signature 164 185 IPR002963 GO:0009664
Stsc90893g00002 247 PRINTS Expansin signature 152 164 IPR002963 GO:0009664
Stsc90893g00002 247 PRINTS Expansin signature 50 64 IPR002963 GO:0009664
Stsc90893g00002 247 PRINTS Expansin signature 111 128 IPR002963 GO:0009664
Stsc90893g00002 247 SMART dpbb_1 55 143 IPR007112 -
Stsc90893g00002 247 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Stsc90893g00002 247 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Stsc90893g00002 247 PRINTS Expansin/Lol pI family signature 19 34 IPR007118 GO:0005576
Stsc90893g00002 247 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Stsc90893g00002 247 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Stsc90893g00002 247 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Stsc90893g00002 247 SUPERFAMILY Barwin-like endoglucanases 12 171 IPR036908 -
Stsc90893g00002 247 FunFam Expansin 9 149 - -
Stsc90893g00002 247 Pfam Lytic transglycolase 55 143 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90893g00002 Stsc-Chr90893 15578 17206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90893g00002 1 247 Expansin Gene Family AT4G01630 74.297 1.20e-142 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90893g00002 - - jre:109000507 437.573