Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90892g00011 ATGGGATCAAGCAGCTTTCTGTGGAATTTTACCAAAAAGTTTGTCACGTTTGGGCTCATTACTGTTACTGTGTCTGATCGATACGTAACAGTGGTTCCAGTTCGGGGTGGCTCTATGTCTCCCACATTGAATCCAAAAACCAGCTCTTCTGCAGGAAACTTCTCTGATGATTATGTCTTGGTTGAGAAGATTTGTCTTGACAAATACAAATTTTCACATGGAGATGTTGTGGTCTTCAGTTCCCCATTGAATCACAAGGAGAGACACATAAAGAGAATAGTTGCATTACCTGGTGAATGGTTTGGCAGTCGCCAGAACTACGATGTTTTGAAGGTTCCAGAAGGGCATTGTTGGATTGAGGGAGATAATGCGGCCGCTAGCATGGATTCAAAGTCATTTGGACCTATTCCTTTGGGGCTCATTCGAGGAAGGGTGACCCATGTTGTGTGGCCTCCACACAGAATGGGTGCCATCCAGAGTCCTCCGCGAGAAGGATTATCTTCTTTATAG 510 0.4471 MGSSSFLWNFTKKFVTFGLITVTVSDRYVTVVPVRGGSMSPTLNPKTSSSAGNFSDDYVLVEKICLDKYKFSHGDVVVFSSPLNHKERHIKRIVALPGEWFGSRQNYDVLKVPEGHCWIEGDNAAASMDSKSFGPIPLGLIRGRVTHVVWPPHRMGAIQSPPREGLSSL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90892g00011 169 PRINTS Bacterial leader peptidase 1 (S26A) family signature 112 131 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc90892g00011 169 PRINTS Bacterial leader peptidase 1 (S26A) family signature 89 101 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc90892g00011 169 PRINTS Bacterial leader peptidase 1 (S26A) family signature 27 43 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc90892g00011 169 CDD S26_SPase_I 31 145 IPR019533 GO:0004252|GO:0006465
Stsc90892g00011 169 Gene3D Umud Fragment, subunit A 26 160 - -
Stsc90892g00011 169 FunFam Mitochondrial inner membrane protease subunit 25 162 - -
Stsc90892g00011 169 Pfam Signal peptidase, peptidase S26 8 99 IPR019533 GO:0004252|GO:0006465
Stsc90892g00011 169 Pfam Signal peptidase, peptidase S26 105 150 IPR019533 GO:0004252|GO:0006465
Stsc90892g00011 169 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 1 160 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Stsc90892g00011 169 NCBIfam signal peptidase I 19 105 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc90892g00011 169 SUPERFAMILY LexA/Signal peptidase 29 158 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90892g00011 Stsc-Chr90892 43462 44801 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90892g00011 39 162 MADS-box Gene Family AT1G29960 36.154 8.22e-19 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90892g00011 K09648 - qsa:O6P43_026217 276.944