Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90890g00014 ATGTTTGACTCTGGTTACAAGTCACAATACATGGGTAGCCAGCAGGACAAACTTTACAGGTTGGAAGTCTTTGATTCTAGACTATCTTCATCTACTGATGCTGGAGTTAAAAAATCTGGATTTAGTATTGATAAATTAAGCAATAATGGTCATGGAAGCTGCACAACCTCTAGGTCCTTTAAAAGAGGAATGAGAAAGGGATCTGAAGGGCTGAAGTCAATTGGCCGATCACTTGGATTTGGGGTATCTAAGGCAGTGTTTCCAGAAGATCTTAAGGTGTCGGAAAAGAAGATATTTGATCCTCAAGACAAATTTTTGCTCTTATGGAATAAACTTTCTCTTATCTCATGCATTTTGGCTGTGTCCGTGGATCCACTGTTCTTTTATCTTCCTGTCATCGATGATCAAGCACACTGTGTTGGCATAGACCGAAAGTTGTCAGTTATAGCTACAACCTTAAGGACAGTCATTGATGCTTTCTATCTTATACACATGGCACTCCAATTTCGTACTGCATATATTGCTCCATCATCTCGTGTGTTTGGACGGGGTGAGCTTGTCATAGATCCAGCACAGATAGCCAAGCGATACTTGCGGCGATATTTCATCATTGATTTCCTATCTGTATTTCCCTTGCCACAGATTGTGATAGTTGGGGCGTTTTGGTACTTGTTAGCAATTGAACGCAATGATTTTTGCTGGCAGAAGGCTTGCAGCAATGTTTGCAACAAAAACTTCCTGTATTGTGGCAACCAATACATGGAAGGTTATGCTGCCTGGCAGAACATAAGTGCCAATACTCTTAAGGACAACTGTGCTGCAGATGGTGACAATCCACCTTTTGATTATGGAATTTTTGGGCAAGCTTTGACATCTGATATTGTTTCATCATCTAAGAATTTCGTCTCCAAATACTGCTATTGTTTATGGTGGGGGCTCCAGAATCTGAGTACACTTGGCCAGGGCCTTCAAACTAGCACCTATCCTGGTGAGGTTATATTTTCAATAGCACTAGCTATTGCTGGACTCATTCTCTTTGCACTTCTGATTGGCAACATGCAGACATACCTTCAGTCCCTTACCATTAGGCTGGAGGAAATGAGAGTGAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACAGGATCTTAGAGAGCGTGTGAGACGTTATGATCAATATAAGTGGTTGGCAACACGTGGTGTAGATGAAGAACACCTGGTTCAGAGTCTACCAAAGGATCTGCGAAGAGATATTAAGCGACATCTTTGTCTAGCTTTAGTGAGGAGGGTTCCTCTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAACCATGTTTATTTACAGAGAATACTTACATTGTCCGTGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATAAGAGGTCGCCTTGAGAGTGTCACCACAGATGGTGGGAGAAGTGGATTTTTCAACCGTGGTTTTCTAAAAGAGGCTGACTTCTGTGGTGAGGAACTTTTGACCTGGGCACTGGATCCCAGATCTGGCTCTAATCTCCCAACTTCTACTAGAACAGTTAAGGCATTGACTGAGGTTGAAGCTTTTGCCTTAACTGCTGATGAGTTAAAGTTTGTAGCCAGTCAGTTTAGACGCCTTCACAGTAGACAGGTGCAGCACACTTTCCGTTTTTACTCCCAGCAATGGAGGACTTGGGCTGCTTGCTTTATTCAAGCAGCGTGGCGCCGTTATTCTAAAAAGAAAATTATGAAGCTTCGCCAGAAGGAAGATCCCGACGAGTCAGAAGGAGCTCAAAACACTGCTGGTGGCACTTCATACAGCCTTGGTGCTGCCCTGTTAGCCTCAAAATTTGCTGCGCACACTCTTCGTGGCGTACAACGCAATCGAAATGCCAGGACTGCCAGGGAATTGGTGAAACTACAGAAACCACCAGAGCCCGACTTTACAGCAGATGATGCAGACTAG 1992 0.4352 MFDSGYKSQYMGSQQDKLYRLEVFDSRLSSSTDAGVKKSGFSIDKLSNNGHGSCTTSRSFKRGMRKGSEGLKSIGRSLGFGVSKAVFPEDLKVSEKKIFDPQDKFLLLWNKLSLISCILAVSVDPLFFYLPVIDDQAHCVGIDRKLSVIATTLRTVIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDFLSVFPLPQIVIVGAFWYLLAIERNDFCWQKACSNVCNKNFLYCGNQYMEGYAAWQNISANTLKDNCAADGDNPPFDYGIFGQALTSDIVSSSKNFVSKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLATRGVDEEHLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPRSGSNLPTSTRTVKALTEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKKKIMKLRQKEDPDESEGAQNTAGGTSYSLGAALLASKFAAHTLRGVQRNRNARTARELVKLQKPPEPDFTADDAD 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90890g00014 663 SUPERFAMILY cAMP-binding domain-like 365 556 IPR018490 -
Stsc90890g00014 663 Gene3D - 215 361 - -
Stsc90890g00014 663 Pfam Ion transport protein 216 362 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc90890g00014 663 MobiDBLite consensus disorder prediction 638 663 - -
Stsc90890g00014 663 FunFam Cyclic nucleotide-gated ion channel 1 363 427 - -
Stsc90890g00014 663 CDD CAP_ED 436 567 IPR000595 -
Stsc90890g00014 663 SUPERFAMILY Voltage-gated potassium channels 100 358 - -
Stsc90890g00014 663 Gene3D Jelly Rolls 434 554 IPR014710 -
Stsc90890g00014 663 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 217 657 - -
Stsc90890g00014 663 SMART cnmp_10 436 567 IPR000595 -
Stsc90890g00014 663 FunFam Cyclic nucleotide-gated ion channel 1 434 552 - -
Stsc90890g00014 663 Gene3D Helix hairpin bin 364 427 - -
Stsc90890g00014 663 Pfam Cyclic nucleotide-binding domain 457 547 IPR000595 -
Stsc90890g00014 663 MobiDBLite consensus disorder prediction 637 663 - -
Stsc90890g00014 663 ProSiteProfiles cAMP/cGMP binding motif profile. 436 520 IPR000595 -
Stsc90890g00014 663 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc90890g00014 663 PRINTS EAG/ELK/ERG potassium channel family signature 331 342 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc90890g00014 663 PRINTS EAG/ELK/ERG potassium channel family signature 349 358 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc90890g00014 663 PRINTS EAG/ELK/ERG potassium channel family signature 399 406 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc90890g00014 663 PRINTS EAG/ELK/ERG potassium channel family signature 305 322 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90890g00014 Stsc-Chr90890 45886 52097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90890g00014 1 661 Ion Channels AT2G23980 65.863 0.0 955
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90890g00014 K05391 - gmx:100784309 1078.54