Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90890g00005 ATGGCTGAGCAACCGAGCTCCGCCGAAGCTGTCACGGAGGGAGTGCCGGAGCTTCACCCGAAAGAGAAGGATTCAGAAGGCGGCGAAGATGGAAACGAACAAGGACAACAAGGGAAGGCGCCAGAGGGAGAAGGAGAACGAGTTAGCGGATCGCCCTGCGAAACTGAGTCGCTGGAGAGTTCTGATAAACCTCCGAAGGGGTCGAATTCAGGAACCCTAGCTGCTAAATCACCTGTTGTGAAGAATCAGAGTGACGAGTTGCAGGGGAGCCATACCACGCCGAATACGGATGTCAAAGCTGAAAGTAAGGAGACAGAAGGACCTCGTGAAAAGGAAACCATTGCAAGTGAAGCAGTACAACCACCTCCAACTCAGATAGAAAATCAGCCACAGGTGTCTGCAAGTTCAACTCCATTGTCAGAACTGTCACCAACTTCTGTTACACAATCTTTATCATCTGTTAATAGTCAAATTGTCCCCATACAAAACGTGACACCTTTGAAGATTAATTATGATCATGTGCCACAATTGGACAAAAAAAATCCTTCTGGTGGCAAACCTGTATCTTGTGGTTCTGTTACAAGGGTTTCAGTTTCTGATGGTTACAGCTGGCGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCTGCAGGGTCTCGAAGCTATTACAGGTGTACTCATTCAGAATGTTCTGCGAAGAAGATTGAATGCAATGATGATATGGGTCGTGTGATAGATGTTGTTTATAAAAGTCAACACAGTCATGATCCCCCACATAAGCCTAATTCTATTAGGGAAAGTAAGCCAGTGTCTTCCAGTGGACCTCCTAATGTAGAAAACAAAGTTTCTCAGCAGCTATCTTTCAGAGGTCTGAAAAACTCTGATCCATCCCCTTCAAAAGAACCCTTACAAGATGCACCTCGCAGTGTTGACAAGAAAAGACAAAACTCATCTAATCTCAGTGACAATGGTAAAGTTGTTTTGAAGGAGGAACATCTTAATGAGTCAGAGCCAAAGAAAAGAATGAAGAAAGATGACTTAGCAGACTTGGATTCTCCTGTAAAATCTGGAAAGAAATCCAGGTTTGTTGTACATGCGGAAGGGGATGTAGGTATATCAGGTGATGGATACCGATGGCGCAAGTATGGACAGAAGATGGTGAAGGGGAATCCACATCCGAGAAACTACTACAGATGTACTTCTGCTGGATGTCCTGTCCGAAAACACATTGAGACCGCTGTTGATAACTCGAACGCTGTCATCATAACATACAAGGGTGTACATGACCATGACATGCCTGTGCCAAAGAAACGACATGGGCCACTAAGTGCTCCTCTCGTGGCTGCTGCATCACCGACTTCCATGAACACGTCGCAGTCTAAGAAAAATCCTGATTCTCCTAAAAAACAGAACAAGTCTACTCAATGGTCGGTGGACACTGAAGGAGGAGAACTAAGCGGGGAAGCAATGGATCTTGGAGGTGAAAAGGCAATAGAGTCAGCTCGCACACTTCTGAGCATAGGTTTTGAAATTAAGCCATGCTGA 1542 0.4533 MAEQPSSAEAVTEGVPELHPKEKDSEGGEDGNEQGQQGKAPEGEGERVSGSPCETESLESSDKPPKGSNSGTLAAKSPVVKNQSDELQGSHTTPNTDVKAESKETEGPREKETIASEAVQPPPTQIENQPQVSASSTPLSELSPTSVTQSLSSVNSQIVPIQNVTPLKINYDHVPQLDKKNPSGGKPVSCGSVTRVSVSDGYSWRKYGQKQVKSPAGSRSYYRCTHSECSAKKIECNDDMGRVIDVVYKSQHSHDPPHKPNSIRESKPVSSSGPPNVENKVSQQLSFRGLKNSDPSPSKEPLQDAPRSVDKKRQNSSNLSDNGKVVLKEEHLNESEPKKRMKKDDLADLDSPVKSGKKSRFVVHAEGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSNAVIITYKGVHDHDMPVPKKRHGPLSAPLVAAASPTSMNTSQSKKNPDSPKKQNKSTQWSVDTEGGELSGEAMDLGGEKAIESARTLLSIGFEIKPC 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90890g00005 513 MobiDBLite consensus disorder prediction 97 113 - -
Stsc90890g00005 513 FunFam WRKY transcription factor 358 433 - -
Stsc90890g00005 513 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 101 464 IPR044810 GO:0003700
Stsc90890g00005 513 MobiDBLite consensus disorder prediction 448 492 - -
Stsc90890g00005 513 SMART WRKY_cls 198 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90890g00005 513 SMART WRKY_cls 372 431 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90890g00005 513 MobiDBLite consensus disorder prediction 264 299 - -
Stsc90890g00005 513 SUPERFAMILY WRKY DNA-binding domain 368 432 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc90890g00005 513 MobiDBLite consensus disorder prediction 324 353 - -
Stsc90890g00005 513 MobiDBLite consensus disorder prediction 15 30 - -
Stsc90890g00005 513 MobiDBLite consensus disorder prediction 250 353 - -
Stsc90890g00005 513 SUPERFAMILY WRKY DNA-binding domain 195 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc90890g00005 513 Pfam WRKY DNA -binding domain 374 429 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90890g00005 513 Pfam WRKY DNA -binding domain 200 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90890g00005 513 MobiDBLite consensus disorder prediction 53 96 - -
Stsc90890g00005 513 MobiDBLite consensus disorder prediction 118 153 - -
Stsc90890g00005 513 ProSiteProfiles WRKY domain profile. 367 432 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90890g00005 513 MobiDBLite consensus disorder prediction 448 480 - -
Stsc90890g00005 513 Gene3D WRKY domain 356 433 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc90890g00005 513 Gene3D WRKY domain 189 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc90890g00005 513 MobiDBLite consensus disorder prediction 1 153 - -
Stsc90890g00005 513 ProSiteProfiles WRKY domain profile. 199 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90890g00005 Stsc-Chr90890 13874 17295 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90890g00005 85 513 WRKY Transcription Factor Family AT4G30935 49.658 4.33e-125 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc90890g00005 WRKY 1.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90890g00005 - - gmx:100782194 625.935